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scnpilot_solids1_trim150_scaffold_262

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_262_1
Desulfovibrio aespoeensis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..486
DNA (486bp) protein (162aa)
DNA damage-inducible protein n=1 Tax=Desulfovibrio longus RepID=UPI0003B70D62
type III restriction protein res subunit
Type III restriction protein res subunit {ECO:0000313|EMBL:ADU61426.1}; TaxID=643562 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2).;"
scnpilot_solids1_trim150_scaffold_262_2
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

483..839
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z1W1_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM86984.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
scnpilot_solids1_trim150_scaffold_262_3
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

836..2401
DNA (1566bp) protein (522aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037429BF
Uncharacterized protein {ECO:0000313|EMBL:AKF86645.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
beta-lactamase domain-containing protein
scnpilot_solids1_trim150_scaffold_262_4
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2434..2778)
DNA (345bp) protein (115aa)
Putative uncharacterized protein n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G7A7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EHQ53694.1}; TaxID=519989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_262_5
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2768..2998)
DNA (231bp) protein (77aa)
Transcriptional regulator, AbrB family n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q602Q6_METCA
AbrB family transcriptional regulator
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:AAU90965.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
scnpilot_solids1_trim150_scaffold_262_6
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3130..4347)
DNA (1218bp) protein (406aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI000377EFC0 rbh
threonine synthase rbh
Threonine synthase {ECO:0000313|EMBL:AGL18012.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
scnpilot_solids1_trim150_scaffold_262_7
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4377..5888)
DNA (1512bp) protein (504aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI000379C010 rbh
putative amino acid transporter rbh
Amino acid permease-associated region {ECO:0000313|EMBL:EGO95015.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
scnpilot_solids1_trim150_scaffold_262_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5977..9102)
DNA (3126bp) protein (1042aa)
Heavy metal efflux pump CzcA n=1 Tax=Rhodanobacter sp. 115 RepID=I4VUI8_9GAMM rbh
Heavy metal efflux pump CzcA {ECO:0000313|EMBL:EIL90879.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
heavy metal efflux pump, cobalt-zinc-cadmium
scnpilot_solids1_trim150_scaffold_262_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9099..10259)
DNA (1161bp) protein (387aa)
Secretion protein HlyD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1X4_9GAMM
Secretion protein HlyD {ECO:0000313|EMBL:EIL93465.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
RND family efflux transporter, MFP subunit
scnpilot_solids1_trim150_scaffold_262_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10469..12043)
DNA (1575bp) protein (525aa)
Efflux transporter, outer membrane factor lipoprotein, NodT family n=1 Tax=Rhodanobacter denitrificans RepID=M4NLG8_9GAMM
efflux transporter, outer membrane factor lipoprotein, NodT family
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:AGG90483.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_262_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12302..14713
DNA (2412bp) protein (804aa)
helicase (EC:3.6.1.-); K06877 DEAD/DEAH box helicase domain-containing protein
Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Z3_9GAMM
Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster {ECO:0000313|EMBL:EIL95234.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_262_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14710..15561
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBR6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96907.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative exonuclease; K07502 hypothetical protein
scnpilot_solids1_trim150_scaffold_262_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16010..17668
DNA (1659bp) protein (553aa)
Putative aminopeptidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NGU1_9GAMM
putative aminopeptidase
Putative aminopeptidase {ECO:0000313|EMBL:AGG90165.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_262_14

Not on your lists

comp(17789..20842)
DNA (3054bp) protein (1018aa)
Glycosyl hydrolase BNR repeat-containing protein n=3 Tax=mine drainage metagenome RepID=T0ZU02_9ZZZZ rbh
Glycosyl hydrolase BNR repeat-containing protein {ECO:0000313|EMBL:EQD51766.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_262_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20919..24107)
DNA (3189bp) protein (1063aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BDE25
Uncharacterized protein {ECO:0000313|EMBL:AHX13450.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_262_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24460..27294)
DNA (2835bp) protein (945aa)
Outer membrane receptor for ferrienterochelin and colicins n=8 Tax=Rhodanobacter denitrificans RepID=M4NAP4_9GAMM
Outer membrane receptor for ferrienterochelin and colicins {ECO:0000313|EMBL:AGG87579.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
outer membrane receptor for ferrienterochelin and colicins
scnpilot_solids1_trim150_scaffold_262_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27597..28880
DNA (1284bp) protein (428aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Diaminopimelate decarboxylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WW35_9GAMM
diaminopimelate decarboxylase
scnpilot_solids1_trim150_scaffold_262_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29040..30746
DNA (1707bp) protein (569aa)
N-acyl-D-aspartate/D-glutamate deacylase n=1 Tax=Rhodanobacter denitrificans RepID=M4NL20_9GAMM rbh
N-acyl-D-aspartate/D-glutamate deacylase rbh
N-acyl-D-aspartate/D-glutamate deacylase {ECO:0000313|EMBL:AGG90368.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_262_19
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30959..31555
DNA (597bp) protein (199aa)
Sigma-70, region 4 type 2 n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KN82_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KJS05986.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_solids1_trim150_scaffold_262_20
gamma proteobacterium NOR5-3, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31552..32625
DNA (1074bp) protein (358aa)
CytoChrome c oxidase Cbb3-type, subunit I n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KN81_9GAMM
CytoChrome c oxidase Cbb3-type, subunit I {ECO:0000313|EMBL:EED31481.1}; TaxID=566466 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium NOR5-3.;"
regulatory protein
scnpilot_solids1_trim150_scaffold_262_21
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32724..33131
DNA (408bp) protein (136aa)
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid n=1 Tax=Rhizobium sp. CF080 RepID=J2JKP3_9RHIZ
Ligand-gated channel {ECO:0000313|EMBL:AJQ45953.1}; TaxID=1384061 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida S13.1.2.;"
ferrichrome-iron receptor; K02014 iron complex outermembrane recepter protein
scnpilot_solids1_trim150_scaffold_262_22
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33235..36024
DNA (2790bp) protein (930aa)
Outer membrane receptor for ferrienterochelin and colicins n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5A0_9GAMM
outer membrane receptor for ferrienterochelin and colicins; K02014 iron complex outermembrane recepter protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_262_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36073..36936
DNA (864bp) protein (288aa)
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Diaminopimelate epimerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUH3_9GAMM
scnpilot_solids1_trim150_scaffold_262_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37065..38417
DNA (1353bp) protein (451aa)
Amino acid transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDX5_9GAMM
Amino acid transporter {ECO:0000313|EMBL:EIL97666.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
amino acid transporter
scnpilot_solids1_trim150_scaffold_262_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38470..39549
DNA (1080bp) protein (360aa)
Beta-lactamase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1X0_9GAMM
Beta-lactamase {ECO:0000313|EMBL:EIL93461.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
penicillin-binding protein, beta-lactamase class C
scnpilot_solids1_trim150_scaffold_262_26
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39615..42530
DNA (2916bp) protein (972aa)
Putative TonB dependent receptor n=1 Tax=Alishewanella agri BL06 RepID=I8UAI0_9ALTE
TonB-dependent receptor {ECO:0000313|EMBL:KGM54884.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
putative TonB dependent receptor; K02014 iron complex outermembrane recepter protein
scnpilot_solids1_trim150_scaffold_262_27
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42594..43604)
DNA (1011bp) protein (337aa)
Mandelate racemase/muconate lactonizing enzyme n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDZ2_PHEZH rbh
mandelate racemase/muconate lactonizing enzyme rbh
Mandelate racemase/muconate lactonizing enzyme {ECO:0000313|EMBL:ACG78425.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
scnpilot_solids1_trim150_scaffold_262_28
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43601..44635)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z888_9GAMM rbh
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
scnpilot_solids1_trim150_scaffold_262_29
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44846..45589
DNA (744bp) protein (248aa)
Sulfate transporter, CysZ-type n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1V2_9GAMM
putative permease
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_262_30
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45664..47934)
DNA (2271bp) protein (757aa)
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSI6_9GAMM
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein {ECO:0000313|EMBL:EIM02428.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
Displaying items 1-30 of 34 in total

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