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SCN18_25_1_16_R1_B_scaffold_617

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_617_1
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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58..339
DNA (282bp) protein (94aa)
Translation initiation factor IF-1 n=2 Tax=Oligotropha carboxidovorans RepID=B6JJC1_OLICO
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000313|EMBL:AEI05441.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_25_1_16_R1_B_scaffold_617_2
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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618..830
DNA (213bp) protein (71aa)
Cold shock protein CspA n=10 Tax=Bradyrhizobiaceae RepID=B6JJC2_OLICO
cold-shock DNA-binding domain-containing protein
Cold shock protein CspA {ECO:0000313|EMBL:EKS34120.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCN18_25_1_16_R1_B_scaffold_617_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(941..1591)
DNA (651bp) protein (217aa)
Flp pilus assembly protein TadG n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SVW7_NITWN
Flp pilus assembly protein TadG
Flp pilus assembly protein TadG {ECO:0000313|EMBL:ABA03574.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCN18_25_1_16_R1_B_scaffold_617_4
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1598..2158)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NUW7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34122.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
TadE family protein
SCN18_25_1_16_R1_B_scaffold_617_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2347..2823)
DNA (477bp) protein (159aa)
CpaC-like protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003647A44
pilus assembly protein CpaC
Putative pilus assembly protein {ECO:0000313|EMBL:AHY56774.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
SCN18_25_1_16_R1_B_scaffold_617_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3357..3533
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UFJ7_9RHOB
Flp pilus assembly protein, pilin Flp {ECO:0000313|EMBL:AKI02765.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
Flp pilus assembly protein, pilin Flp
SCN18_25_1_16_R1_B_scaffold_617_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3859..4383
DNA (525bp) protein (175aa)
Peptidase A24A, prepilin type IV n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q210E0_RHOPB
peptidase A24A, prepilin type IV
Peptidase A24A, prepilin type IV {ECO:0000313|EMBL:ABD89246.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCN18_25_1_16_R1_B_scaffold_617_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4518..5306
DNA (789bp) protein (263aa)
Flp pilus assembly CpaB n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR64_NITHX
Flp pilus assembly CpaB
Flp pilus assembly CpaB {ECO:0000313|EMBL:ABE61283.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R1_B_scaffold_617_9
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5325..6806
DNA (1482bp) protein (494aa)
Type II and III secretion system protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR65_NITHX
type II and III secretion system protein
Type II and III secretion system protein {ECO:0000313|EMBL:ABE61282.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R1_B_scaffold_617_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6828..7568
DNA (741bp) protein (247aa)
Putative pilus assembly protein cpaD signal peptide n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TMI4_9BRAD
Putative pilus assembly protein cpaD signal peptide {ECO:0000313|EMBL:CCE07672.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
pilus assembly protein CpaD
SCN18_25_1_16_R1_B_scaffold_617_11
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7565..8836
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P058_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34129.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
pilus assembly protein CpaE
SCN18_25_1_16_R1_B_scaffold_617_12
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8860..10338
DNA (1479bp) protein (493aa)
Pilus assembly protein CpaF n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HGQ8_9BRAD
Protein kinase {ECO:0000313|EMBL:KJC54591.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
ctpG; pilus assembly protein
SCN18_25_1_16_R1_B_scaffold_617_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10348..11325
DNA (978bp) protein (326aa)
Putative pilus assembly protein membrane protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RXZ9_9BRAD
Putative pilus assembly protein membrane protein {ECO:0000313|EMBL:CCD86826.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
pilus assembly protein
SCN18_25_1_16_R1_B_scaffold_617_14
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11496..12470
DNA (975bp) protein (325aa)
Type II secretion system protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR70_NITHX
type II secretion system protein
Type II secretion system protein {ECO:0000313|EMBL:ABE61277.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R1_B_scaffold_617_15
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12705..13478)
DNA (774bp) protein (258aa)
Tetratricopeptide TPR_2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR71_NITHX
Uncharacterized protein {ECO:0000313|EMBL:KIZ40918.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
tetratricopeptide TPR_2
SCN18_25_1_16_R1_B_scaffold_617_16
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13630..15012
DNA (1383bp) protein (461aa)
Leucine aminopeptidase 2, chloroplastic {ECO:0000256|SAAS:SAAS00070899}; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00279693};; EC=3.4.11.1 {ECO:0000256|SAAS:SAAS00070892};; Leucine aminopeptidase 3, chloroplastic {ECO:0000256|SAAS:SAAS00070897}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
Leucyl aminopeptidase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IIR8_9BRAD
aminopeptidase
SCN18_25_1_16_R1_B_scaffold_617_17
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15005..15847
DNA (843bp) protein (281aa)
Ethanolamine ammonia-lyase small subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HGR2_9BRAD
Peptidase P60 {ECO:0000313|EMBL:KJC54598.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
NLP/P60 protein
SCN18_25_1_16_R1_B_scaffold_617_18
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16142..16450
DNA (309bp) protein (103aa)
Putative endonuclease containing a URI domain n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YLB3_9BRAD
Putative endonuclease containing a URI domain {ECO:0000313|EMBL:EHR02206.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
excinuclease ABC subunit C
SCN18_25_1_16_R1_B_scaffold_617_19
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16498..17163)
DNA (666bp) protein (222aa)
Putative MutT/ADP-ribose pyrophosphatase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N3K6_RHOPA
nucleoside diphosphate pyrophosphatase
Putative MutT/ADP-ribose pyrophosphatase {ECO:0000313|EMBL:CAE29128.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCN18_25_1_16_R1_B_scaffold_617_20
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17156..18796)
DNA (1641bp) protein (547aa)
Peptide ABC transporter, ATP-binding protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N3K5_RHOPA
peptide ABC transporter ATP-binding protein
Putative oligopeptide transport protein (ABC superfamily, atp_bind) {ECO:0000313|EMBL:CAL74921.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
SCN18_25_1_16_R1_B_scaffold_617_21
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18808..19986)
DNA (1179bp) protein (393aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WRV7_9BRAD
ABC transporter permease {ECO:0000313|EMBL:ETR77365.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
binding-protein dependent transport system inner membrane protein
SCN18_25_1_16_R1_B_scaffold_617_22
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19986..21095)
DNA (1110bp) protein (370aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WRU8_9BRAD
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EAQ37287.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
binding-protein-dependent transport systems inner membrane component
SCN18_25_1_16_R1_B_scaffold_617_23
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21092..23035)
DNA (1944bp) protein (648aa)
Microcin C transport system substrate-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IIS2_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig181, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46691.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
ABC transporter substrate-binding protein
SCN18_25_1_16_R1_B_scaffold_617_24
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(23292..25256)
DNA (1965bp) protein (655aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WRV0_9BRAD
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:EAQ37289.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
extracellular solute-binding protein
Displaying 24 items

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