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berkeley_reactor_200306_biofilm_scaffold_4461

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_4461_1
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..565)
DNA (564bp) protein (188aa)
Cell wall hydrolase SleB n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LKT3_9RHIZ
Cell wall hydrolase SleB {ECO:0000313|EMBL:EKF18369.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
cell wall hydrolase SleB
berkeley_reactor_200306_biofilm_scaffold_4461_2
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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759..2072
DNA (1314bp) protein (438aa)
gabT; 4-aminobutyrate aminotransferase (EC:2.6.1.19)
4-aminobutyrate aminotransferase apoenzyme {ECO:0000313|EMBL:ABQ31454.1}; EC=2.6.1.19 {ECO:0000313|EMBL:ABQ31454.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI0003681F19
berkeley_reactor_200306_biofilm_scaffold_4461_3
unknown

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comp(2425..2703)
DNA (279bp) protein (93aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_4461_4
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2883..4100
DNA (1218bp) protein (406aa)
sugar transporter n=1 Tax=Rhizobium loti RepID=UPI000364B1FE
arabinose efflux permease family protein
Sugar transporter {ECO:0000313|EMBL:ESY96344.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
berkeley_reactor_200306_biofilm_scaffold_4461_5
unknown

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comp(4122..5213)
DNA (1092bp) protein (364aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_4461_6
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5583..6620
DNA (1038bp) protein (346aa)
UPI0003D02EEC related cluster n=1 Tax=unknown RepID=UPI0003D02EEC
LacI family transcriptional regulator {ECO:0000313|EMBL:ESZ11511.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_4461_7
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6684..7958
DNA (1275bp) protein (425aa)
Sugar binding protein of sugar ABC transporter n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YF54_9RHIZ
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:CDX11088.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
sugar binding protein of sugar ABC transporter
berkeley_reactor_200306_biofilm_scaffold_4461_8
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8052..8978
DNA (927bp) protein (309aa)
sugar ABC transporter permease n=1 Tax=Kaistia granuli RepID=UPI00037695F3
Permease protein of sugar ABC transporter {ECO:0000313|EMBL:CCV06192.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
binding-protein-dependent transport systems inner membrane component
berkeley_reactor_200306_biofilm_scaffold_4461_9
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8978..9835
DNA (858bp) protein (286aa)
ABC transporter permease n=1 Tax=Kaistia granuli RepID=UPI000370E6D2
ABC transporter permease {ECO:0000313|EMBL:ESW92517.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
binding-protein-dependent transport systems inner membrane component
berkeley_reactor_200306_biofilm_scaffold_4461_10
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9859..11799
DNA (1941bp) protein (647aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000374D80E
Uncharacterized protein {ECO:0000313|EMBL:CDX37918.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_4461_11
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11905..12285)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003681B3A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK51208.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
berkeley_reactor_200306_biofilm_scaffold_4461_12
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12865..14175
DNA (1311bp) protein (437aa)
Extracellular solute-binding protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YL05_9RHIZ
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJC50554.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
extracellular solute-binding protein
berkeley_reactor_200306_biofilm_scaffold_4461_13
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14268..14423
DNA (156bp) protein (52aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X5Q4_OCHA4
binding--dependent transport system inner membrane component family protein
Binding-protein-dependent transport system inner membrane protein {ECO:0000313|EMBL:EMG51493.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
Displaying 13 items

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