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berkeley_reactor_200306_biofilm_scaffold_150415

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_150415_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1117)
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TKV0_9BRAD
Aminodeoxychorismate lyase {ECO:0000313|EMBL:KIZ47564.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_150415_2
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1349..2608)
DNA (1260bp) protein (420aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HVH3_AZOC5
3-oxoacyl-ACP synthase
berkeley_reactor_200306_biofilm_scaffold_150415_3
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2675..2911)
DNA (237bp) protein (79aa)
acyl carrier protein n=1 Tax=Methylopila sp. M107 RepID=UPI000369C586
acyl carrier protein
Tax=RBG_16_Alphaproteobacteria_64_48_curated
berkeley_reactor_200306_biofilm_scaffold_150415_4
bacterium YEK0313, Bacteria

Not on your lists

comp(3272..4009)
DNA (738bp) protein (246aa)
3-oxoacyl-ACP synthase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003064220
3-oxoacyl-[acyl-carrier-protein] reductase FabG {ECO:0000313|EMBL:CEJ12613.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_150415_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4057..5001)
DNA (945bp) protein (315aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IX89_RHOP2
malonyl CoA-acyl carrier protein transacylase
berkeley_reactor_200306_biofilm_scaffold_150415_6
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5170..6303
DNA (1134bp) protein (378aa)
Iron-containing alcohol dehydrogenase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YEX6_MOBAS
4-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:KJB97419.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
iron-containing alcohol dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_150415_7
unknown

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comp(6341..6628)
DNA (288bp) protein (96aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_150415_8
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6870..8333
DNA (1464bp) protein (488aa)
UPI0003CE0920 related cluster n=1 Tax=unknown RepID=UPI0003CE0920
Uncharacterized protein {ECO:0000313|EMBL:ESW77252.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
glycosyl transferase family protein
berkeley_reactor_200306_biofilm_scaffold_150415_9
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8403..8765)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00036A078F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL07064.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
berkeley_reactor_200306_biofilm_scaffold_150415_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9051..9566
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LE35_AGRSH
Uncharacterized protein {ECO:0000313|EMBL:KFC75725.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_150415_11
unknown

Not on your lists

9581..9892
DNA (312bp) protein (104aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_150415_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(9910..10968)
DNA (1059bp) protein (353aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000377B8FB
putative oxidoreductase, LLM family
Putative oxidoreductase, LLM family {ECO:0000313|EMBL:AHG89712.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
berkeley_reactor_200306_biofilm_scaffold_150415_13
unknown

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comp(11059..11226)
DNA (168bp) protein (56aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_150415_14
unknown

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11402..11629
DNA (228bp) protein (76aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_150415_trna_1
unknown

Not on your lists

comp(11506..11578)
DNA (73bp)
transferRNA Lys
berkeley_reactor_200306_biofilm_scaffold_150415_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11870..12349
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJL1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KFC61574.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_150415_16
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12500..13060
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I6B7_AZOC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF88386.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_150415_17
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13120..13392
DNA (273bp) protein (91aa)
Transcriptional regulator, XRE family n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2ICE5_BEII9
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACB96742.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_150415_18
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13399..14457)
DNA (1059bp) protein (353aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003603A68
putative oxidoreductase protein
Putative oxidoreductase protein {ECO:0000313|EMBL:AHK46340.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
berkeley_reactor_200306_biofilm_scaffold_150415_19
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14674..15459)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11M27_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG61548.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
berkeley_reactor_200306_biofilm_scaffold_150415_20
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15652..16740)
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Thiothrix disciformis RepID=UPI00037E0168
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFG68730.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
malK; maltose/maltodextrin import ATP-binding protein MalK
berkeley_reactor_200306_biofilm_scaffold_150415_21
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16744..17577)
DNA (834bp) protein (278aa)
ABC-type sugar transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWX5_9RHIZ
Sugar ABC transporter permease {ECO:0000313|EMBL:KFG68731.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
maltose transport system permease MalG
berkeley_reactor_200306_biofilm_scaffold_150415_22
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17577..18500)
DNA (924bp) protein (308aa)
Permease component of ABC-type sugar transporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWX6_9RHIZ
Permease component of ABC-type sugar transporter {ECO:0000313|EMBL:EIM28468.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
malF; maltose transport system permease MalF
berkeley_reactor_200306_biofilm_scaffold_150415_23
Grimontia sp. AD028, Grimontia, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18656..19915)
DNA (1260bp) protein (420aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SQF6_HAHCH
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKD58041.1}; TaxID=1581149 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Grimontia.;" source="Grimontia sp. AD028.;"
sugar ABC transporter periplasmic protein
berkeley_reactor_200306_biofilm_scaffold_150415_24
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20310..21335
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037C832F
HTH-type transcriptional regulator AglR {ECO:0000313|EMBL:EHK59271.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
LacI family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_150415_25
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21480..22214)
DNA (735bp) protein (245aa)
RNA-directed DNA polymerase (Reverse transcriptase) n=1 Tax=Thauera sp. 28 RepID=N6YGX7_9RHOO
reverse transcriptase family protein
Reverse transcriptase family protein {ECO:0000313|EMBL:AIO36809.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
Displaying 26 items

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