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berkeley_reactor_200306_biofilm_scaffold_37757

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_37757_1
Jatropha curcas, Jatropha, Malpighiales, rosids, Streptophyta, Viridiplantae

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comp(2..256)
DNA (255bp) protein (85aa)
ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RKQ3_RICCO
Uncharacterized protein {ECO:0000313|EMBL:KDP33677.1}; TaxID=180498 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha.;" source="Jatropha curcas (Barbados nut).;"
berkeley_reactor_200306_biofilm_scaffold_37757_2
Thermodesulfobacterium geofontis, Thermodesulfobacterium, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

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631..1575
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI0003620215
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH22445.1}; TaxID=795359 species="Bacteria; Thermodesulfobacteria; Thermodesulfobacteriales; Thermodesulfobacteriaceae; Thermodesulfobacterium.;" source="Thermodesulfobacterium geofontis (strain OPF15).;"
berkeley_reactor_200306_biofilm_scaffold_37757_3
Mesorhizobium sp. LSJC264A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1550..2404)
DNA (855bp) protein (285aa)
CDP-diacylglycerol pyrophosphatase (EC:3.6.1.26)
Uncharacterized protein n=2 Tax=Mesorhizobium RepID=V7F4A0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX25112.1}; TaxID=1287321 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC264A00.;"
berkeley_reactor_200306_biofilm_scaffold_37757_4
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2452..3204)
DNA (753bp) protein (251aa)
oxidoreductase n=1 Tax=Sinorhizobium medicae RepID=UPI000362E5E7
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABR61304.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
berkeley_reactor_200306_biofilm_scaffold_37757_5
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3252..4250)
DNA (999bp) protein (333aa)
Transcriptional regulator with sigma factor-related N-terminal domain containing protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HQU0_9RHIZ
Transcriptional regulator with sigma factor-related N-terminal domain containing protein {ECO:0000313|EMBL:EJN02748.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
DeoR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_37757_6
Pseudomonas sp. Ag1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4247..5764)
DNA (1518bp) protein (506aa)
Carbohydrate kinase n=1 Tax=Pseudomonas sp. Ag1 RepID=J1IHR9_9PSED
Carbohydrate kinase {ECO:0000313|EMBL:EJF70862.1}; TaxID=1197727 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Ag1.;"
sugar kinase
berkeley_reactor_200306_biofilm_scaffold_37757_7
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6058..7074)
DNA (1017bp) protein (339aa)
Theronine dehydrogenase-like Zn-dependent dehydrogenase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HQH1_9RHIZ
Theronine dehydrogenase-like Zn-dependent dehydrogenase {ECO:0000313|EMBL:EJN02746.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
galactitol-1-phosphate 5-dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_37757_8
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7106..8248)
DNA (1143bp) protein (381aa)
Glycerol dehydrogenase-related enzyme (EC:1.1.1.6)
Glycerol dehydrogenase n=5 Tax=Rhizobium meliloti RepID=F6DZU9_SINMK
Glycerol dehydrogenase {ECO:0000313|EMBL:AEH79958.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
berkeley_reactor_200306_biofilm_scaffold_37757_9
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8389..9927)
DNA (1539bp) protein (513aa)
Carbohydrate kinase FGGY n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UCC3_SINMW
Pentose kinase {ECO:0000313|EMBL:KGM35816.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
carbohydrate kinase FGGY
berkeley_reactor_200306_biofilm_scaffold_37757_10
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9933..10097)
DNA (165bp) protein (55aa)
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IR66_RHIML
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEG07838.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
Displaying 10 items

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