ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_7733_44

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 49472..50647

Top 3 Functional Annotations

Value Algorithm Source
RND family efflux transporter, MFP subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVA3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 62.7
  • Coverage: 370.0
  • Bit_score: 471
  • Evalue 4.50e-130
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:EIM27895.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.7
  • Coverage: 370.0
  • Bit_score: 471
  • Evalue 6.20e-130
RND family efflux transporter MFP subunit similarity KEGG
DB: KEGG
  • Identity: 54.9
  • Coverage: 370.0
  • Bit_score: 392
  • Evalue 7.40e-107

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Microvirga lotononidis → Microvirga → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1176
ATGGTCCAAGCCACGACGTCCCAGCGCAGGCCCGCGTGCCGGCGCCTCCTCCGCCTCGCCCCGCTGCTGGCCCTCGGCCTCGCCCTCGCGCCGGCCGCGCAGGCCCAGCAGCCGCCCGCGCCGACCGTCACCGTCGCCAAGCCCGTGGTGAAGGACGTCGTCGAGTATGACGACTTCATCGGCCGCTTCGAGGCGGTCGACCAGGTCGACATCCGCGCCCGCGTCTCCGGCTATGTCGACAAGATCGCCTTCGCCGACGGGGCCATCGTCAAGGCCGGCGACCCGCTGTTCACCATCGACCAGCGCCCCTACCAGGCGGCGCTGGAGGAGGCGCAGGCGAGCCTGGAATCGGCCAAGGCCAATCTCGACTTCACCACCGGCGATCTCGCCCGCGCCGAGGACCTGCGCAAGACCGGCAACATCTCCGGCCAGATCTACGACCAGCGCACCCAGGCCTTGGCGACGGCGCGCGCCGACGTGAACCGCACCCAGGCGACGCTGAACCGCGCCAAGCTCGACATGCAGTTCACCGAGATCAAGGCGCCGATCTCCGGGCGCCTGTCGCGCCGCCTGGTGTCGATCGGCAACCTCGTCAATGCCAACGACACCATCCTCACCAACATCGTGTCGATGGATCCGATCCAGTTCTACTTCGACGTCGACGAGCGCTCCTTCCTGGCCTACGAGAAGCTGGCGACCGGCTCGCTCAAGGTGTCGATCGGCGGCGACCCCAACGAGGTGTCGGTGGCGACCTCCGACGAGGACGAGCCCACCCACAAGGGGCACATGGACTTCACCGAGAACCGGCTCGACCAGGCGAGCGGCACGATCCGGGCCCGGGCGGAGTTCCCCAACAAGGACCTCAAGCTGGTGCCGGGCCTGTTCGGGCGCATCCGCATCCTCGGCTCCGACAAATATCGCGGCGTGCTGGTGCCGGAGGAGGCGCTGTCGACCGACCAGGACCGCCGGGTGGTCTATGTCGTCGGGCCCGACAACACCGTGTCGCTGCAGCCGGTGCGCGTCGGCTCGCGCGTCGACGGCTACCGCGTCATCCGCGAGGGCCTCAAGGGCGACGAGACCATCGTCGTCAACGGGCTGATGCGCGTGCGGCCGGGCGTCAAGATCACGCCGAAGCCGACCACCCTGCCCGACGTCTACGTCGTGGCCAAGCAGTAG
PROTEIN sequence
Length: 392
MVQATTSQRRPACRRLLRLAPLLALGLALAPAAQAQQPPAPTVTVAKPVVKDVVEYDDFIGRFEAVDQVDIRARVSGYVDKIAFADGAIVKAGDPLFTIDQRPYQAALEEAQASLESAKANLDFTTGDLARAEDLRKTGNISGQIYDQRTQALATARADVNRTQATLNRAKLDMQFTEIKAPISGRLSRRLVSIGNLVNANDTILTNIVSMDPIQFYFDVDERSFLAYEKLATGSLKVSIGGDPNEVSVATSDEDEPTHKGHMDFTENRLDQASGTIRARAEFPNKDLKLVPGLFGRIRILGSDKYRGVLVPEEALSTDQDRRVVYVVGPDNTVSLQPVRVGSRVDGYRVIREGLKGDETIVVNGLMRVRPGVKITPKPTTLPDVYVVAKQ*