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berkeley_reactor_200306_biofilm_scaffold_7733

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Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_7733_1
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..885)
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J9DSX7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW09522.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_7733_2
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1376..1909
DNA (534bp) protein (178aa)
Acetyltransferase n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6ATQ7_DELSC
acetyltransferase
Acetyltransferase {ECO:0000313|EMBL:AEF87921.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
berkeley_reactor_200306_biofilm_scaffold_7733_3
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1936..2361)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000346E2C3
Bradyrhizobium elkanii strain UASWS1015 Contig171, whole genome shotgun sequence {ECO:0000313|EMBL:KIU50096.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_7733_4
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2481..2816
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000381B4F1
Bradyrhizobium elkanii strain UASWS1015 Contig171, whole genome shotgun sequence {ECO:0000313|EMBL:KIU50095.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_7733_5
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2830..4191)
DNA (1362bp) protein (454aa)
Peptidoglycan-binding domain 1 protein n=1 Tax=Methylobacterium extorquens (strain CM4 / NCIMB 13688) RepID=B7KTK4_METC4
peptidoglycan-binding protein
Peptidoglycan-binding domain 1 protein {ECO:0000313|EMBL:ACK82531.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
berkeley_reactor_200306_biofilm_scaffold_7733_6
bacterium YEK0313, Bacteria

Not on your lists

comp(4390..6612)
DNA (2223bp) protein (741aa)
Helicase, RecD/TraA family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IFR0_METNO
ATP-dependent RecD-like DNA helicase {ECO:0000313|EMBL:CEJ10699.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
recombinase D
berkeley_reactor_200306_biofilm_scaffold_7733_7
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6657..7358)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035FC339
AsnC family transcriptional regulator {ECO:0000313|EMBL:KJV09709.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
GntR family transcriptional regulator protein
berkeley_reactor_200306_biofilm_scaffold_7733_8
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7485..8417
DNA (933bp) protein (311aa)
Dihydrodipicolinate synthetase family {ECO:0000313|EMBL:EFH09929.1}; EC=4.3.3.7 {ECO:0000313|EMBL:EFH09929.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000362E963
dihydrodipicolinate synthase
berkeley_reactor_200306_biofilm_scaffold_7733_9
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8428..9438
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00038134F4
Hydroxyproline-2-epimerase {ECO:0000313|EMBL:KJV09708.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
hydroxyproline-2-epimerase
berkeley_reactor_200306_biofilm_scaffold_7733_10
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9478..10413)
DNA (936bp) protein (312aa)
Phytanoyl-CoA dioxygenase (PhyH) n=1 Tax=Rhizobium sp. CF142 RepID=J1SKV4_9RHIZ
Phytanoyl-CoA dioxygenase (PhyH) {ECO:0000313|EMBL:EJJ25853.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_7733_11
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10536..11399
DNA (864bp) protein (288aa)
Transcriptional regulator n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IFM2_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EPE97803.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
transcriptional regulator, AraC family
berkeley_reactor_200306_biofilm_scaffold_7733_12
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11520..12395)
DNA (876bp) protein (292aa)
Transglutaminase domain protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2ICY6_BEII9
transglutaminase domain-containing protein
Transglutaminase domain protein {ECO:0000313|EMBL:ACB96840.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_7733_13
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12395..14911)
DNA (2517bp) protein (839aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000379391A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH91633.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_7733_14
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14936..18265)
DNA (3330bp) protein (1110aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A2V2_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH91632.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_7733_15
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18358..19461)
DNA (1104bp) protein (368aa)
Cobalt-precorrin-5B C(1)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00787}; EC=2.1.1.195 {ECO:0000256|HAMAP-Rule:MF_00787};; Cobalt-precorrin-6A synthase {ECO:0000256|HAMAP-Rule:MF_00787}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Putative cobalt-precorrin-6A synthase [deacetylating] n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IUS3_METNO
cbiD; cobalt-precorrin-6A synthase
berkeley_reactor_200306_biofilm_scaffold_7733_16
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19458..20372)
DNA (915bp) protein (305aa)
pirin n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000376259E
Pirin-related protein {ECO:0000313|EMBL:EYD74337.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
pirin domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_7733_17
unknown

Not on your lists

20458..20775
DNA (318bp) protein (106aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_7733_18
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20902..21246)
DNA (345bp) protein (115aa)
Uncharacterized protein {ECO:0000313|EMBL:KGB82322.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
berkeley_reactor_200306_biofilm_scaffold_7733_19
Brucella melitensis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21433..22050
DNA (618bp) protein (206aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=1351836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella melitensis ADMAS-G1.;"
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Brucella ceti B1/94 RepID=C9VGJ5_9RHIZ
phosphoglyceromutase
berkeley_reactor_200306_biofilm_scaffold_7733_20
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22261..23154)
DNA (894bp) protein (298aa)
methylated-DNA--protein-cysteine methyltransferase (EC:2.1.1.63)
O-6-methylguanine DNA methyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUD9_9RHIZ
6-O-methylguanine DNA methyltransferase {ECO:0000313|EMBL:KFG67375.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
berkeley_reactor_200306_biofilm_scaffold_7733_21
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23215..23730)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037EC515
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB96668.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_7733_22
bacterium YEK0313, Bacteria

Not on your lists

23753..24505
DNA (753bp) protein (251aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D6E0B4
endonuclease III
berkeley_reactor_200306_biofilm_scaffold_7733_23
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24731..26131)
DNA (1401bp) protein (467aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Adenosylhomocysteinase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IBQ2_XANP2
S-adenosyl-L-homocysteine hydrolase
berkeley_reactor_200306_biofilm_scaffold_7733_24
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26228..26665)
DNA (438bp) protein (146aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
3-dehydroquinate dehydratase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UBQ9_METS4
3-dehydroquinate dehydratase
berkeley_reactor_200306_biofilm_scaffold_7733_25
Mesorhizobium sp. L2C089B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26873..28111)
DNA (1239bp) protein (413aa)
Glutamate-1-semialdehyde aminotransferase n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7GV84_9RHIZ
Glutamate-1-semialdehyde aminotransferase {ECO:0000313|EMBL:ESZ02191.1}; TaxID=1287120 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C089B000.;"
4-aminobutyrate aminotransferase
berkeley_reactor_200306_biofilm_scaffold_7733_26
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28113..29399)
DNA (1287bp) protein (429aa)
C4-dicarboxylate transport system n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JHY8_AGRRK
ABC transporter permease
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:KEA08149.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
berkeley_reactor_200306_biofilm_scaffold_7733_27
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29396..29908)
DNA (513bp) protein (171aa)
C4-dicarboxylate transport system n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JHY7_AGRRK
C4-dicarboxylate transport system
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:KEA08150.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
berkeley_reactor_200306_biofilm_scaffold_7733_28
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29919..30932)
DNA (1014bp) protein (338aa)
C4-dicarboxylate-binding protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JQU7_AGRVS
C4-dicarboxylate-binding protein
C4-dicarboxylate-binding protein {ECO:0000313|EMBL:ACM35360.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
berkeley_reactor_200306_biofilm_scaffold_7733_29
Mesorhizobium sp. LNJC391B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31185..32087
DNA (903bp) protein (301aa)
UPI0003CF14DC related cluster n=1 Tax=unknown RepID=UPI0003CF14DC
Transcriptional regulator {ECO:0000313|EMBL:ESY32182.1}; TaxID=1287273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC391B00.;"
LysR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_7733_30
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32661..33581)
DNA (921bp) protein (307aa)
Transcriptional regulator, LysR family n=2 Tax=Rhizobium meliloti RepID=F6C1W1_SINMB
LysR family transcriptional regulator
Putative transcriptional regulator, LysR family protein {ECO:0000313|EMBL:CDH82883.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
Displaying items 1-30 of 59 in total

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