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berkeley_reactor_200306_biofilm_scaffold_7733

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Displaying items 31-59 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_7733_31
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33711..35576
DNA (1866bp) protein (622aa)
Putative 4-hydroxyphenylpyruvate dioxygenase protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KMD4_RHISN
4-hydroxyphenylpyruvate dioxygenase
Putative 4-hydroxyphenylpyruvate dioxygenase protein {ECO:0000313|EMBL:ACP21493.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
berkeley_reactor_200306_biofilm_scaffold_7733_32
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35598..36491)
DNA (894bp) protein (298aa)
Putative AraC family transcriptional regulator n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X4Q3_RHIFR
AraC family transcriptional regulator
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:AFL50859.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
berkeley_reactor_200306_biofilm_scaffold_7733_33
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36647..38140
DNA (1494bp) protein (498aa)
Alpha-galactosidase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Z2H9_9RHIZ
Alpha-galactosidase {ECO:0000313|EMBL:EMS42734.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
Family 4 glycosyl hydrolase, alpha-galactosidase/6-phospho-beta-glucosidase
berkeley_reactor_200306_biofilm_scaffold_7733_34
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38202..39458
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YQW4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGM33193.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
extracellular solute-binding protein
berkeley_reactor_200306_biofilm_scaffold_7733_35
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39482..40423
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y7C4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGM31205.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_7733_36
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40423..41268
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y6F5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGM31204.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
binding protein-dependent transport system, inner membrane component
berkeley_reactor_200306_biofilm_scaffold_7733_37
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41312..42202)
DNA (891bp) protein (297aa)
aroE1; shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase AroE {ECO:0000313|EMBL:AFL50805.1}; EC=1.1.1.25 {ECO:0000313|EMBL:AFL50805.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
Shikimate dehydrogenase AroE n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X4J9_RHIFR
berkeley_reactor_200306_biofilm_scaffold_7733_38
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42536..43246
DNA (711bp) protein (237aa)
Transcription regulator,TetR family n=2 Tax=Rhizobium meliloti RepID=M4MJZ2_RHIML
Transcription regulator,TetR family
Transcription regulator,TetR family {ECO:0000313|EMBL:AGG71034.1}; TaxID=1286640 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain Sm2011 / Rm2011 / 2011).;"
berkeley_reactor_200306_biofilm_scaffold_7733_39
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43488..44555
DNA (1068bp) protein (356aa)
Secreted sugar-binding protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FK54_PELBH
ABC transporter periplasmic-binding protein ytfQ
Secreted sugar-binding protein {ECO:0000313|EMBL:EAU44551.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
berkeley_reactor_200306_biofilm_scaffold_7733_40
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

44609..46093
DNA (1485bp) protein (495aa)
hypothetical protein n=1 Tax=Rhodococcus sp. 29MFTsu3.1 RepID=UPI00037FCAD4
Ribose import ATP-binding protein RbsA
Ribose import ATP-binding protein RbsA {ECO:0000313|EMBL:AHK34259.1}; TaxID=543736 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus PD630.;"
berkeley_reactor_200306_biofilm_scaffold_7733_41
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

46132..47097
DNA (966bp) protein (322aa)
ribose ABC transporter permease n=1 Tax=Rhodococcus opacus RepID=UPI00029CD4C5
putative ABC transporter permease protein yphD
Putative ABC transporter permease protein yphD {ECO:0000313|EMBL:AHK34258.1}; TaxID=543736 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus PD630.;"
berkeley_reactor_200306_biofilm_scaffold_7733_42
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

47094..48071
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Rhodococcus sp. 29MFTsu3.1 RepID=UPI0003788797
Ribose transport system permease protein rbsC
Ribose transport system permease protein rbsC {ECO:0000313|EMBL:AHK34257.1}; TaxID=543736 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus PD630.;"
berkeley_reactor_200306_biofilm_scaffold_7733_43
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48080..49015
DNA (936bp) protein (312aa)
Putative cyclase n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T9H8_9BRAD
Cyclase {ECO:0000313|EMBL:KJB94517.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
cyclase
berkeley_reactor_200306_biofilm_scaffold_7733_44
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49472..50647
DNA (1176bp) protein (392aa)
RND family efflux transporter, MFP subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVA3_9RHIZ
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:EIM27895.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
RND family efflux transporter MFP subunit
berkeley_reactor_200306_biofilm_scaffold_7733_45
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50659..53823
DNA (3165bp) protein (1055aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVA4_9RHIZ
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter {ECO:0000313|EMBL:EIM27896.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
mexF2; multidrug-efflux system
berkeley_reactor_200306_biofilm_scaffold_7733_46
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53953..54408)
DNA (456bp) protein (152aa)
Phosphotransferase system HPr (HPr) family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYK8_9RHIZ
Serine kinase {ECO:0000313|EMBL:KFG67979.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
phosphotransferase system, phosphocarrier protein HPr
berkeley_reactor_200306_biofilm_scaffold_7733_47
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54405..54806)
DNA (402bp) protein (134aa)
PTS system fructose subfamily IIA component n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ILR2_AZOC5
PTS system fructose subfamily transporter subunit IIA
PTS system fructose subfamily IIA component {ECO:0000313|EMBL:BAF90066.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_7733_48
bacterium YEK0313, Bacteria

Not on your lists

comp(55055..55504)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000363EB30
HPr kinase/phosphorylase {ECO:0000313|EMBL:CEJ15813.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
HPr kinase
berkeley_reactor_200306_biofilm_scaffold_7733_49
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55501..57258)
DNA (1758bp) protein (586aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A2W2_STAND
integral membrane sensor signal transduction histidine kinase
berkeley_reactor_200306_biofilm_scaffold_7733_50
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57269..57967)
DNA (699bp) protein (233aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QLT7_METTR
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABJ04777.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
berkeley_reactor_200306_biofilm_scaffold_7733_51
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58111..58884
DNA (774bp) protein (258aa)
pyridoxamine 5''''-phosphate oxidase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00037438E9
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
Pyridoxamine 5'-phosphate oxidase-related FMN-binding {ECO:0000313|EMBL:ACA14797.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_7733_52
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58988..60175
DNA (1188bp) protein (396aa)
Aspartate/tyrosine/aromatic aminotransferase (EC:2.6.1.84)
aminotransferase n=1 Tax=Rhizobium meliloti RepID=UPI000375ED9C
Aspartate aminotransferase {ECO:0000313|EMBL:KEC81702.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
berkeley_reactor_200306_biofilm_scaffold_7733_53
Burkholderia sp. USM B20, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60190..61788
DNA (1599bp) protein (533aa)
Acetolactate synthase, large subunit n=1 Tax=Burkholderia sp. (strain 383) RepID=Q39P46_BURS3
Uncharacterized protein {ECO:0000313|EMBL:KJE50760.1}; TaxID=1571773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. USM B20.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_7733_54
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

61864..63033
DNA (1170bp) protein (390aa)
acyl-CoA dehydrogenase (EC:1.3.99.3)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:CAM02129.1}; EC=1.3.99.3 {ECO:0000313|EMBL:CAM02129.1};; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (strain NRRL 23338).;"
Acyl-CoA dehydrogenase n=1 Tax=Saccharopolyspora erythraea (strain NRRL 23338) RepID=A4FDK4_SACEN
berkeley_reactor_200306_biofilm_scaffold_7733_55
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

63177..65267
DNA (2091bp) protein (697aa)
Putative acyl-CoA synthetase n=1 Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WHK1_9ACTO
Putative acyl-CoA synthetase {ECO:0000313|EMBL:EFL21253.1}; TaxID=457427 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATCC 53653.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_7733_56
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

65264..66052
DNA (789bp) protein (263aa)
caiD; carnitinyl-CoA dehydratase (EC:4.2.1.-)
Carnitinyl-CoA dehydratase {ECO:0000313|EMBL:CAM02131.1}; EC=4.2.1.- {ECO:0000313|EMBL:CAM02131.1};; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (strain NRRL 23338).;"
Carnitinyl-CoA dehydratase n=2 Tax=Saccharopolyspora erythraea RepID=A4FDK6_SACEN
berkeley_reactor_200306_biofilm_scaffold_7733_57
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66184..67332
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003813B14
Uncharacterized protein {ECO:0000313|EMBL:EHH04664.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_7733_58
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67336..70440
DNA (3105bp) protein (1035aa)
ATP-dependent nuclease subunit B n=1 Tax=Rhodovulum sp. PH10 RepID=J6JG93_9RHOB
ATP-dependent nuclease subunit B {ECO:0000313|EMBL:EJW13655.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
Double-strand break repair protein AddB
berkeley_reactor_200306_biofilm_scaffold_7733_59
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70727..73603
DNA (2877bp) protein (959aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036B3EC4
double-strand break repair helicase AddA
Displaying items 31-59 of 59 in total

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