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cn_combo_scaffold_76

Alias: RUB134_5

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Displaying items 61-90 of 177 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_76_60
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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66154..66930
DNA (777bp) protein (259aa)
pcm; protein-L-isoaspartate(D-aspartate) O-methyltransferase Pcm (EC:2.1.1.77)
Protein-L-isoaspartate(D-aspartate) O-methyltransferase Pcm {ECO:0000313|EMBL:BAL96674.1}; EC=2.1.1.77 {ECO:0000313|EMBL:BAL96674.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteri
Protein-L-isoaspartate(D-aspartate) O-methyltransferase Pcm n=2 Tax=Rubrivivax gelatinosus RepID=I0HUI7_RUBGI
cn_combo_scaffold_76_61
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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67055..68023
DNA (969bp) protein (323aa)
Subfamily M23B unassigned peptidase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SF77_METPP
peptidase; K06194 lipoprotein NlpD Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
peptidase
cn_combo_scaffold_76_62
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68131..69006
DNA (876bp) protein (292aa)
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Polaromonas sp. CF318 RepID=J3D9D6_9BURK
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EJL87374.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadac
inner-membrane translocator
cn_combo_scaffold_76_63
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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69019..70095
DNA (1077bp) protein (359aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein id=12552752 bin=BDI species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
putative branched-chain amino acid ABC transporter, permease protein
cn_combo_scaffold_76_64
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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70092..70904
DNA (813bp) protein (271aa)
branched-chain amino acid ABC transporter ATP-binding protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00037E187A
Branched-chain amino acid transport ATP-binding protein LivG
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG23398.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholder
cn_combo_scaffold_76_65
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70901..71686
DNA (786bp) protein (262aa)
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
Branched-chain amino acid transport ATP-binding protein LivF
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein id=12552754 bin=BDI species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
cn_combo_scaffold_76_66
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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71683..73542
DNA (1860bp) protein (620aa)
AMP-dependent synthetase and ligase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CP76_VARPS
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ACS21540.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax
cn_combo_scaffold_76_67
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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73574..74743
DNA (1170bp) protein (390aa)
Extracellular ligand-binding receptor n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MS92_9BURK
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EIK92082.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydr
extracellular ligand-binding receptor
cn_combo_scaffold_76_68
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74867..76225
DNA (1359bp) protein (453aa)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_0
rumA; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQG1_9BURK
cn_combo_scaffold_76_69
unknown

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76250..76339
DNA (90bp) protein (30aa)

This feature has no annotations

cn_combo_scaffold_76_70
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76358..77665)
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HQG8_RUBGI
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAL95255.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
cn_combo_scaffold_76_71
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77823..78509)
DNA (687bp) protein (229aa)
membrane protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000380C6F9
FtsH-interacting integral membrane protein {ECO:0000313|EMBL:EJL80169.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Vario
hypothetical protein
cn_combo_scaffold_76_72
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78739..79137
DNA (399bp) protein (133aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRP3_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB85188.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
cn_combo_scaffold_76_73
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79225..80421
DNA (1197bp) protein (399aa)
carA; carbamoyl-phosphate synthetase subunit A CarA (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain {ECO:0000255|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000255|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000255|HAMAP-Rule:MF_012
Carbamoyl-phosphate synthase small chain n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=CARA_RUBGI
cn_combo_scaffold_76_74
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80423..83695
DNA (3273bp) protein (1091aa)
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; B
Carbamoyl-phosphate synthase large chain n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SF85_METPP
cn_combo_scaffold_76_75
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

83816..84292
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUI0_RUBGI
greA; transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=983917 species="Bacteria
cn_combo_scaffold_76_76
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84343..84810)
DNA (468bp) protein (156aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TQZ8_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB85034.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
cn_combo_scaffold_76_77
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

84831..85517
DNA (687bp) protein (229aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547};
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XVU0_RAMTT
rrmJ; cell division protein ftsJ
cn_combo_scaffold_76_78
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

85626..87533
DNA (1908bp) protein (636aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholde
ftsH; ATP-dependent zinc metalloprotease FtsH (EC:3.4.24.-) rbh
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUH5_RUBGI
cn_combo_scaffold_76_79
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87737..89068
DNA (1332bp) protein (444aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=987059 species="Bacteri
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQH2_9BURK
cn_combo_scaffold_76_80
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89177..90214
DNA (1038bp) protein (346aa)
Phosphate-binding protein PstS n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WI79_9BURK
phosphate-binding periplasmic (pbp) ABC transporter protein; K02040 phosphate transport system substrate-binding protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
phosphate-binding periplasmic (pbp) ABC transporter protein
cn_combo_scaffold_76_81
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

90285..91307
DNA (1023bp) protein (341aa)
Phosphate transport system permease protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SF96_METPP
phosphate transport system permease; K02037 phosphate transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
phosphate transport system permease rbh
cn_combo_scaffold_76_82
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

91304..92167
DNA (864bp) protein (288aa)
Phosphate transport system permease protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SF97_METPP
Phosphate transport system permease protein PstA {ECO:0000313|EMBL:EWS61615.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium
pstA; phosphate transporter permease subunit PtsA rbh
cn_combo_scaffold_76_83
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92188..92973
DNA (786bp) protein (262aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-tran
Phosphate transport ATP-binding protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQH7_9BURK
pstB; phosphate ABC transporter ATP binding protein, PstB
cn_combo_scaffold_76_84
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92993..93700
DNA (708bp) protein (236aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQH8_9BURK
phoU; phosphate transport system protein PhoU
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="R
cn_combo_scaffold_76_85
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

93697..94431
DNA (735bp) protein (245aa)
Two component transcriptional regulator n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQH9_9BURK
Two component transcriptional regulator {ECO:0000313|EMBL:EGJ10597.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyt
phoB; phosphate regulon transcriptional regulatory protein PhoB
cn_combo_scaffold_76_86
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94464..95843
DNA (1380bp) protein (460aa)
multi-sensor signal transduction histidine kinase (EC:2.7.3.-); K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] Tax=RIFCSPHIGHO2_12_FULL_Burkhold
phoR; phosphate regulon sensor protein PhoR (EC:2.7.13.3)
Phosphate regulon sensor protein PhoR n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUG5_RUBGI
cn_combo_scaffold_76_87
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95816..97477)
DNA (1662bp) protein (554aa)
Putative membrane protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUG4_RUBGI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:BAL96651.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC
cn_combo_scaffold_76_88
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

97549..98496
DNA (948bp) protein (316aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAM
hemC; porphobilinogen deaminase HemC (EC:2.5.1.61)
Porphobilinogen deaminase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WL54_9BURK
cn_combo_scaffold_76_89
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

98535..99317
DNA (783bp) protein (261aa)
hemD; uroporphyrinogen-III synthase HemD (EC:4.2.1.75)
Uroporphyrinogen-III synthase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WL55_9BURK
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:EHR70244.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium
Displaying items 61-90 of 177 in total

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