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SCNpilot_P_inoc_Myxococcales_68_7

In projects: SCNpilot_P_inoc

Consensus taxonomy: Myxococcales  →  Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 6.83 Longest contig: 295.41 Kbp Bin length: 11.84 Mbp GC content: 68.37 %
Contigs count: 421 Features count: 10148 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 53 / 55 MC: 4 BSCG 51 / 51 MC: 7 ASCG 14 / 38 MC: 1
Displaying items 1-50 of 421 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_7475
Class: Deltaproteobacteria (57.14%)
7 7203 bp 66.67 9.04 76.38
scnpilot_p_inoc_scaffold_1852 27 23511 bp 66.08 8.44 84.76
scnpilot_p_inoc_scaffold_1480
Order: Myxococcales (63.64%)
22 22430 bp 68.57 8.13 85.21
scnpilot_p_inoc_scaffold_1796
Species: Sorangium cellulosum (57.14%)
28 16597 bp 66.68 7.99 90.72
scnpilot_p_inoc_scaffold_1565
Order: Myxococcales (53.57%)
28 28964 bp 67.98 7.87 84.94
scnpilot_p_inoc_scaffold_36524
Species: Myxococcus xanthus (50%)
2 1760 bp 69.55 7.84 89.49
scnpilot_p_inoc_scaffold_4042 25 12024 bp 67.32 7.82 44.09
scnpilot_p_inoc_scaffold_5089
Species: Chondromyces apiculatus (50%)
6 7507 bp 70.67 7.75 86.16
scnpilot_p_inoc_scaffold_1486
Class: Deltaproteobacteria (52.94%)
17 20048 bp 68.63 7.74 90.22
scnpilot_p_inoc_scaffold_2355
Order: Myxococcales (62.5%)
8 13103 bp 68.70 7.73 85.88
scnpilot_p_inoc_scaffold_597
Order: Myxococcales (56.82%)
44 57596 bp 69.04 7.70 88.54
scnpilot_p_inoc_scaffold_7342
Species: Sorangium cellulosum (50%)
6 5830 bp 68.80 7.69 87.38
scnpilot_p_inoc_scaffold_1989
Class: Deltaproteobacteria (53.33%)
15 15188 bp 65.89 7.66 88.23
scnpilot_p_inoc_scaffold_618
Class: Deltaproteobacteria (51.06%)
47 55579 bp 68.01 7.65 89.48
scnpilot_p_inoc_scaffold_582
Order: Myxococcales (57.58%)
66 68788 bp 68.37 7.64 89.85
scnpilot_p_inoc_scaffold_1031
Phylum: Proteobacteria (52.94%)
34 45916 bp 68.63 7.63 88.57
scnpilot_p_inoc_scaffold_3412
Order: Myxococcales (75%)
12 9833 bp 67.83 7.63 90.34
scnpilot_p_inoc_scaffold_1448
Order: Myxococcales (53.85%)
13 20545 bp 67.92 7.62 87.66
scnpilot_p_inoc_scaffold_3486
Species: Sorangium cellulosum (83.33%)
6 9690 bp 70.77 7.60 84.27
scnpilot_p_inoc_scaffold_484
Phylum: Proteobacteria (53.03%)
66 76759 bp 67.47 7.59 89.11
scnpilot_p_inoc_scaffold_1131
Order: Myxococcales (54.55%)
22 27011 bp 68.26 7.59 86.39
scnpilot_p_inoc_scaffold_745
Order: Myxococcales (53.62%)
69 76633 bp 67.91 7.58 89.32
scnpilot_p_inoc_scaffold_711
Order: Myxococcales (57.78%)
45 47991 bp 68.50 7.56 88.40
scnpilot_p_inoc_scaffold_1727 10 17194 bp 68.33 7.55 83.45
scnpilot_p_inoc_scaffold_186
Order: Myxococcales (54.92%)
122 160816 bp 68.73 7.54 89.61
scnpilot_p_inoc_scaffold_1957
Order: Myxococcales (83.33%)
12 15398 bp 67.19 7.53 86.64
scnpilot_p_inoc_scaffold_6655
Domain: Bacteria (60%)
5 6232 bp 68.95 7.53 87.23
scnpilot_p_inoc_scaffold_765
Order: Myxococcales (51.28%)
39 43792 bp 66.88 7.52 85.42
scnpilot_p_inoc_scaffold_2675
Phylum: Proteobacteria (77.78%)
9 11840 bp 64.62 7.51 75.41
scnpilot_p_inoc_scaffold_2328
Order: Myxococcales (50%)
10 13262 bp 68.65 7.48 84.65
scnpilot_p_inoc_scaffold_533
Phylum: Proteobacteria (60.32%)
63 67108 bp 67.32 7.47 89.68
scnpilot_p_inoc_scaffold_2094
Phylum: Proteobacteria (53.85%)
13 16104 bp 67.91 7.47 78.76
scnpilot_p_inoc_scaffold_807
Phylum: Proteobacteria (54.29%)
35 42792 bp 67.46 7.46 89.55
scnpilot_p_inoc_scaffold_1067
Order: Myxococcales (50%)
32 41046 bp 67.09 7.46 86.02
scnpilot_p_inoc_scaffold_1089
Order: Myxococcales (52.38%)
21 28343 bp 68.43 7.45 90.89
scnpilot_p_inoc_scaffold_1354
Order: Myxococcales (50%)
22 22423 bp 67.51 7.45 95.26
scnpilot_p_inoc_scaffold_766
Order: Myxococcales (62.16%)
37 45691 bp 68.33 7.45 90.33
scnpilot_p_inoc_scaffold_542
Order: Myxococcales (53.45%)
58 64897 bp 67.81 7.44 90.14
scnpilot_p_inoc_scaffold_812
Order: Myxococcales (56.25%)
32 40318 bp 67.62 7.44 93.18
scnpilot_p_inoc_scaffold_1702
Order: Myxococcales (55.56%)
9 17489 bp 70.39 7.44 95.32
scnpilot_p_inoc_scaffold_1772
Phylum: Proteobacteria (64.71%)
17 17417 bp 69.06 7.44 85.81
scnpilot_p_inoc_scaffold_710
Order: Myxococcales (52.38%)
42 48081 bp 68.30 7.43 90.92
scnpilot_p_inoc_scaffold_382
Order: Myxococcales (55.63%)
151 176113 bp 68.55 7.42 90.06
scnpilot_p_inoc_scaffold_1129
Phylum: Proteobacteria (58.33%)
36 38015 bp 65.18 7.42 77.47
scnpilot_p_inoc_scaffold_550
Phylum: Proteobacteria (51.92%)
52 63519 bp 68.28 7.40 88.65
scnpilot_p_inoc_scaffold_6610
Order: Myxococcales (57.14%)
7 6260 bp 68.59 7.40 89.57
scnpilot_p_inoc_scaffold_1712
Order: Myxococcales (63.89%)
36 43022 bp 67.83 7.38 93.82
scnpilot_p_inoc_scaffold_1608
Order: Myxococcales (50%)
10 18413 bp 69.64 7.38 95.33
scnpilot_p_inoc_scaffold_836
Order: Myxococcales (50%)
58 69249 bp 68.14 7.37 90.04
scnpilot_p_inoc_scaffold_400
Class: Deltaproteobacteria (51.43%)
70 87368 bp 67.58 7.37 91.41
Displaying items 1-50 of 421 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.