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SCNpilot_P_inoc_Myxococcales_68_7

In projects: SCNpilot_P_inoc

Consensus taxonomy: Myxococcales  →  Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 6.83 Longest contig: 295.41 Kbp Bin length: 11.84 Mbp GC content: 68.37 %
Contigs count: 421 Features count: 10148 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 53 / 55 MC: 4 BSCG 51 / 51 MC: 7 ASCG 14 / 38 MC: 1
Displaying items 251-300 of 421 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_1004
Order: Myxococcales (50%)
30 31330 bp 69.03 6.77 89.28
scnpilot_p_inoc_scaffold_1601
Domain: Bacteria (60%)
30 28721 bp 69.76 6.77 90.72
scnpilot_p_inoc_scaffold_2473
Order: Myxococcales (55.56%)
18 21618 bp 69.30 6.77 92.88
scnpilot_p_inoc_scaffold_516
Order: Myxococcales (64.06%)
64 68168 bp 69.00 6.78 92.89
scnpilot_p_inoc_scaffold_3804
Order: Myxococcales (50%)
12 10421 bp 70.01 6.78 83.08
scnpilot_p_inoc_scaffold_1233
Order: Myxococcales (50%)
20 24649 bp 69.78 6.79 89.72
scnpilot_p_inoc_scaffold_1524
Order: Myxococcales (61.11%)
18 19877 bp 65.42 6.79 79.04
scnpilot_p_inoc_scaffold_1923
Species: Sorangium cellulosum (75%)
12 15612 bp 68.47 6.80 87.95
scnpilot_p_inoc_scaffold_1216
Order: Myxococcales (69.57%)
23 24877 bp 69.17 6.80 87.98
scnpilot_p_inoc_scaffold_1951
Order: Myxococcales (50%)
12 15415 bp 68.80 6.81 88.47
scnpilot_p_inoc_scaffold_2333
Order: Myxococcales (50%)
10 13260 bp 67.43 6.81 84.91
scnpilot_p_inoc_scaffold_1240 19 24532 bp 66.27 6.81 77.96
scnpilot_p_inoc_scaffold_1887
Phylum: Proteobacteria (78.57%)
14 15950 bp 66.78 6.81 86.93
scnpilot_p_inoc_scaffold_2812
Order: Myxococcales (76.92%)
13 11356 bp 69.20 6.82 90.77
scnpilot_p_inoc_scaffold_3125
Order: Myxococcales (55.56%)
9 10446 bp 67.35 6.82 88.17
scnpilot_p_inoc_scaffold_804
Phylum: Proteobacteria (51.52%)
33 41109 bp 68.64 6.83 85.29
scnpilot_p_inoc_scaffold_3860
Species: Sandaracinus amylolyticus (77.78%)
9 9009 bp 66.11 6.83 99.03
scnpilot_p_inoc_scaffold_1579
Order: Myxococcales (66.67%)
33 35710 bp 68.39 6.83 87.07
scnpilot_p_inoc_scaffold_1386
Order: Myxococcales (50%)
20 23628 bp 69.87 6.83 89.33
scnpilot_p_inoc_scaffold_1478
Order: Myxococcales (56.52%)
23 20751 bp 67.50 6.85 82.65
scnpilot_p_inoc_scaffold_932
Phylum: Proteobacteria (51.61%)
31 34151 bp 68.16 6.85 93.06
scnpilot_p_inoc_scaffold_1487
Order: Myxococcales (65%)
20 20014 bp 68.11 6.86 87.30
scnpilot_p_inoc_scaffold_1547
Class: Deltaproteobacteria (53.85%)
13 19239 bp 68.32 6.86 88.88
scnpilot_p_inoc_scaffold_1052
Class: Deltaproteobacteria (56.1%)
41 50984 bp 67.36 6.86 89.18
scnpilot_p_inoc_scaffold_1094
Order: Myxococcales (52.17%)
23 28131 bp 67.83 6.86 88.34
scnpilot_p_inoc_scaffold_1490
Domain: Bacteria (61.9%)
21 19940 bp 67.26 6.87 85.85
scnpilot_p_inoc_scaffold_1527
Order: Myxococcales (69.23%)
13 19530 bp 67.41 6.87 91.32
scnpilot_p_inoc_scaffold_935
Order: Myxococcales (64.71%)
34 48071 bp 69.34 6.87 89.18
scnpilot_p_inoc_scaffold_1156
Phylum: Proteobacteria (51.85%)
27 26113 bp 66.33 6.88 93.46
scnpilot_p_inoc_scaffold_2936
Phylum: Proteobacteria (53.33%)
15 16448 bp 69.16 6.88 83.24
scnpilot_p_inoc_scaffold_796
Order: Myxococcales (54.29%)
35 41714 bp 68.89 6.89 87.55
scnpilot_p_inoc_scaffold_845
Order: Myxococcales (73.08%)
52 65423 bp 69.16 6.89 90.43
scnpilot_p_inoc_scaffold_4223
Phylum: Proteobacteria (63.64%)
11 15762 bp 68.31 6.89 93.55
scnpilot_p_inoc_scaffold_985
Class: Deltaproteobacteria (50%)
28 32278 bp 69.39 6.89 89.63
scnpilot_p_inoc_scaffold_376
Order: Myxococcales (50.62%)
81 92983 bp 68.56 6.90 88.73
scnpilot_p_inoc_scaffold_18573
Order: Myxococcales (66.67%)
3 2985 bp 70.72 6.93 92.86
scnpilot_p_inoc_scaffold_450
Phylum: Proteobacteria (53.25%)
77 78753 bp 68.52 6.93 91.26
scnpilot_p_inoc_scaffold_1405
Order: Myxococcales (58.82%)
17 21315 bp 67.00 6.94 81.77
scnpilot_p_inoc_scaffold_8954
Species: Sorangium cellulosum (60%)
5 5077 bp 69.43 6.94 91.77
scnpilot_p_inoc_scaffold_1153
Order: Myxococcales (70.83%)
24 26204 bp 69.06 6.95 90.31
scnpilot_p_inoc_scaffold_1697
Domain: Bacteria (63.16%)
19 17523 bp 68.96 6.95 91.87
scnpilot_p_inoc_scaffold_367
Order: Myxococcales (64.1%)
78 95434 bp 68.61 6.95 86.61
scnpilot_p_inoc_scaffold_374
Class: Deltaproteobacteria (52.78%)
72 93225 bp 68.05 6.96 88.37
scnpilot_p_inoc_scaffold_496
Order: Myxococcales (52%)
75 83120 bp 68.70 6.96 90.37
scnpilot_p_inoc_scaffold_1044
Order: Myxococcales (60.47%)
43 44502 bp 68.88 6.97 89.53
scnpilot_p_inoc_scaffold_1325
Order: Myxococcales (63.16%)
57 65792 bp 68.35 6.97 90.47
scnpilot_p_inoc_scaffold_811
Order: Myxococcales (50%)
38 40360 bp 68.27 6.98 90.71
scnpilot_p_inoc_scaffold_172
Order: Myxococcales (55%)
160 179211 bp 68.55 6.98 88.70
scnpilot_p_inoc_scaffold_14299
Order: Myxococcales (50%)
6 3626 bp 67.76 6.99 67.43
scnpilot_p_inoc_scaffold_3087
Order: Myxococcales (77.78%)
9 10535 bp 69.40 6.99 96.25
Displaying items 251-300 of 421 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.