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scnpilot_p_inoc_scaffold_4

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Displaying items 1-30 of 778 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_4_1
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

657..887
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0I0N9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB05225.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp.
scnpilot_p_inoc_scaffold_4_2
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1078..2262
DNA (1185bp) protein (395aa)
Abi family protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F2W7_SPHCR rbh
Abi family protein
Abi family protein {ECO:0000313|EMBL:AEG50779.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophe
scnpilot_p_inoc_scaffold_4_3
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2729..4084
DNA (1356bp) protein (452aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J2C8_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB18275.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
exopolyphosphatase
scnpilot_p_inoc_scaffold_4_4
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4081..4776
DNA (696bp) protein (232aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547};
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5L5_9SPHN
ribosomal RNA methyltransferase RrmJ/FtsJ
scnpilot_p_inoc_scaffold_4_5
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5025..5876)
DNA (852bp) protein (284aa)
Putative siderophore-interacting protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4E1_9SPHN rbh
Putative siderophore-interacting protein {ECO:0000313|EMBL:EGD60551.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sou
hypothetical protein
scnpilot_p_inoc_scaffold_4_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6032..8023)
DNA (1992bp) protein (664aa)
thrS; threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000255|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00184}; Short=ThrRS {ECO:0000255|HAMAP-Rule
Threonine--tRNA ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=SYT_NOVAD rbh
scnpilot_p_inoc_scaffold_4_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8112..8840
DNA (729bp) protein (243aa)
Putative hydrolase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJW3_9SPHN rbh
Alpha/beta hydrolase family protein {ECO:0000313|EMBL:AKH43168.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" sou
hydrolase
scnpilot_p_inoc_scaffold_4_8
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8847..9716
DNA (870bp) protein (290aa)
Tetratricopeptide TPR_4 n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EC06_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK92284.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_p_inoc_scaffold_4_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9899..14644
DNA (4746bp) protein (1582aa)
NAD-specific glutamate dehydrogenase {ECO:0000313|EMBL:GAO54483.1}; EC=1.4.1.2 {ECO:0000313|EMBL:GAO54483.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; S
glutamate dehydrogenase (NAD) (EC:1.4.1.2)
glutamate dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B49917 rbh
scnpilot_p_inoc_scaffold_4_10
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14888..15952)
DNA (1065bp) protein (355aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=1096930 specie
Epoxyqueuosine reductase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IES1_9SPHN rbh
4Fe-4S ferredoxin
scnpilot_p_inoc_scaffold_4_11
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16007..16951
DNA (945bp) protein (315aa)
ABC-2 type transport system ATP-binding protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IGA7_9SPHN
ABC transporter ATP-binding protein
ABC-2 type transport system ATP-binding protein {ECO:0000313|EMBL:CCA91173.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium
scnpilot_p_inoc_scaffold_4_12
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16948..18189
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2G4M4_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL24620.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;"
ABC transporter permease
scnpilot_p_inoc_scaffold_4_13
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18368..18829
DNA (462bp) protein (154aa)
Putative methionine sulfoxide reductase, SelR n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IGA9_9SPHN
methionine sulfoxide reductase B
Putative methionine sulfoxide reductase, SelR {ECO:0000313|EMBL:CCA91175.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;
scnpilot_p_inoc_scaffold_4_14
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18787..20619)
DNA (1833bp) protein (611aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WFL3_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EAQ28650.1}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter
hypothetical protein
scnpilot_p_inoc_scaffold_4_15
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20616..21026)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WFL5_9SPHN
Polysaccharide biosynthesis protein GtrA {ECO:0000313|EMBL:KEO96482.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" sourc
hypothetical protein
scnpilot_p_inoc_scaffold_4_16
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21026..22663)
DNA (1638bp) protein (546aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E147 rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:KHS47769.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphi
hypothetical protein
scnpilot_p_inoc_scaffold_4_17
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22836..24536
DNA (1701bp) protein (567aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F0T1_SPHCR rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG50403.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlo
scnpilot_p_inoc_scaffold_4_18
Kluyvera ascorbata, Kluyvera, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24523..25614)
DNA (1092bp) protein (364aa)
Group 1 glycosyl transferase n=1 Tax=Burkholderia cepacia GG4 RepID=J7IXV1_BURCE
Glycosyltransferase {ECO:0000313|EMBL:KFC97280.1}; TaxID=1006000 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kluyvera.;" source="Kluyvera ascorbata A
group 1 glycosyl transferase
scnpilot_p_inoc_scaffold_4_19
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25882..26268)
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y9G4_9RHIZ
UPI0003CF6028 related cluster Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
scnpilot_p_inoc_scaffold_4_20
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26265..26963)
DNA (699bp) protein (233aa)
Methyltransferase type 11 n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SR37_PLAL2
Uncharacterized protein {ECO:0000313|EMBL:KEY46160.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter ama
methyltransferase type 11
scnpilot_p_inoc_scaffold_4_21
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26963..28141)
DNA (1179bp) protein (393aa)
Glycosyl transferase family 2 n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F0S8_SPHCR rbh
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:AEG50400.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobiu
scnpilot_p_inoc_scaffold_4_22
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28471..28749)
DNA (279bp) protein (93aa)
Histone-like DNA-binding protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5H3_9SPHN
Histone-like DNA-binding protein {ECO:0000313|EMBL:EGD60352.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Nov
integration host factor subunit beta
scnpilot_p_inoc_scaffold_4_23
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28938..29291)
DNA (354bp) protein (118aa)
GntR family transcriptional regulator n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00037A6856
GntR family transcriptional regulator {ECO:0000313|EMBL:KEO85690.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source=
GntR family transcriptional regulator
scnpilot_p_inoc_scaffold_4_24
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29397..31181
DNA (1785bp) protein (595aa)
amino acid transporter n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD4F2 rbh
Amino acid transporter {ECO:0000313|EMBL:EQB04401.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bade
amino acid/peptide transporter
scnpilot_p_inoc_scaffold_4_25
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31198..31884
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A1Z5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48773.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
MFS transporter
scnpilot_p_inoc_scaffold_4_26
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32144..32650)
DNA (507bp) protein (169aa)
Fe2+/Zn2+ uptake regulation protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3AD04_9SPHN
Fe2+/Zn2+ uptake regulation protein {ECO:0000313|EMBL:EJL30056.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source=
Fur family transcriptional regulator, zinc uptake regulator
scnpilot_p_inoc_scaffold_4_27
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32670..33359)
DNA (690bp) protein (230aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_014
methionine sulfoxide reductase A (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC16_NOVAD
scnpilot_p_inoc_scaffold_4_28
unknown

Not on your lists

comp(33362..33508)
DNA (147bp) protein (49aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_4_29
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33688..35262)
DNA (1575bp) protein (525aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3 3.5.4.10)
IMP cyclohydrolase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B46EE8 rbh
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sp
scnpilot_p_inoc_scaffold_4_30
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35593..37467)
DNA (1875bp) protein (625aa)
Heparinase II/III-like n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFL3_9SPHN rbh
heparinase II/III-like
Heparinase II/III-like {ECO:0000313|EMBL:CCA91088.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
Displaying items 1-30 of 778 in total

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