ggKbase home page

scnpilot_p_inoc_scaffold_1007

Search features with annotation key words

Displaying items 31-54 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1007_31
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35423..36028
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IHF9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB09084.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_p_inoc_scaffold_1007_32
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36066..36887
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G629_NOVAD rbh
Coenzyme Q (Ubiquinone) biosynthesis protein Coq4 {ECO:0000313|EMBL:KHS49139.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobiu
hypothetical protein
scnpilot_p_inoc_scaffold_1007_33
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36888..39062)
DNA (2175bp) protein (725aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formyl
Phosphoribosylformylglycinamidine synthase 2 n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C7Y1_9SPHN rbh
phosphoribosylformylglycinamidine synthase
scnpilot_p_inoc_scaffold_1007_34
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39161..39418
DNA (258bp) protein (86aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclea
exodeoxyribonuclease VII small subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HAC4_9SPHN
scnpilot_p_inoc_scaffold_1007_35
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39422..40330
DNA (909bp) protein (303aa)
Farnesyl diphosphate synthase {ECO:0000313|EMBL:AKH41461.1}; EC=2.5.1.10 {ECO:0000313|EMBL:AKH41461.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythro
geranyltranstransferase (EC:2.5.1.10)
Geranyltranstransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YMZ4_9SPHN rbh
scnpilot_p_inoc_scaffold_1007_36
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40331..40843
DNA (513bp) protein (171aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyr
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
phosphopantetheine adenylyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B380EB
scnpilot_p_inoc_scaffold_1007_37
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40939..41628
DNA (690bp) protein (230aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YMC2_9SPHN rbh
peptidyl-prolyl cis-trans isomerase
scnpilot_p_inoc_scaffold_1007_38
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41697..42731
DNA (1035bp) protein (345aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};;
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Novosphingobium sp. AP12 RepID=J3ADC8_9SPHN rbh
S-adenosylmethionine tRNA ribosyltransferase rbh
scnpilot_p_inoc_scaffold_1007_39
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42711..44231)
DNA (1521bp) protein (507aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HWE0_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB01839.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium qui
hypothetical protein
scnpilot_p_inoc_scaffold_1007_40
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44313..46028)
DNA (1716bp) protein (572aa)
Putative signal transduction protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KCE7_9RHIZ rbh
Putative signal transduction protein {ECO:0000313|EMBL:EMG52865.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum
putative signal transduction protein
scnpilot_p_inoc_scaffold_1007_41
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46377..47357
DNA (981bp) protein (327aa)
Antibiotic transport system ATP-binding protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VP31_9SPHN rbh
Antibiotic transport system ATP-binding protein {ECO:0000313|EMBL:EZP84910.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium
ABC transporter ATP-binding protein
scnpilot_p_inoc_scaffold_1007_42
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47354..48145
DNA (792bp) protein (264aa)
ABC-type polysaccharide/polyol phosphate export system, permease component n=1 Tax=Novosphingobium sp. AP12 RepID=J2H4C3_9SPHN rbh
Inner membrane transport permease YadH {ECO:0000313|EMBL:AKH41467.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;"
ABC transporter permease
scnpilot_p_inoc_scaffold_1007_43
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48261..49121
DNA (861bp) protein (287aa)
membrane protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225DF47 rbh
Uncharacterized protein {ECO:0000313|EMBL:AKH41468.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter
salt-induced outer membrane protein
scnpilot_p_inoc_scaffold_1007_44
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49171..50304
DNA (1134bp) protein (378aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzym
queuine tRNA-ribosyltransferase (EC:2.4.2.29) rbh
Queuine tRNA-ribosyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YMC0_9SPHN rbh
scnpilot_p_inoc_scaffold_1007_45
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50348..50527
DNA (180bp) protein (60aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4R1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD60402.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
scnpilot_p_inoc_scaffold_1007_46
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50527..52149
DNA (1623bp) protein (541aa)
Putative dehydrogenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZXI1_9SPHN rbh
Putative dehydrogenase {ECO:0000313|EMBL:GAD50099.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein rbh
scnpilot_p_inoc_scaffold_1007_47
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(52253..52867)
DNA (615bp) protein (205aa)
30S ribosomal protein S4 n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IBI9_9SPHN rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosp
30S ribosomal protein S4 rbh
scnpilot_p_inoc_scaffold_1007_48
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53092..53826)
DNA (735bp) protein (245aa)
rRNA methyltransferase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HAA6_9SPHN rbh
rRNA methyltransferase {ECO:0000313|EMBL:EQB09073.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
tRNA/rRNA methyltransferase
scnpilot_p_inoc_scaffold_1007_49
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53816..54292)
DNA (477bp) protein (159aa)
Transcriptional repressor NrdR n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y997_9SPHN
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadace
nrdR; transcriptional regulator NrdR
scnpilot_p_inoc_scaffold_1007_50
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54303..55613)
DNA (1311bp) protein (437aa)
Serine hydroxymethyltransferase 1 {ECO:0000313|EMBL:AKH41474.1}; EC=2.1.2.1 {ECO:0000313|EMBL:AKH41474.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Eryt
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YMB8_9SPHN rbh
scnpilot_p_inoc_scaffold_1007_51
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55619..56059)
DNA (441bp) protein (147aa)
rpiB; ribose 5-phosphate isomerase B (EC:5.3.1.6)
Ribose 5-phosphate isomerase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J097_9SPHN
Ribose 5-phosphate isomerase {ECO:0000313|EMBL:EQB30212.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobiu
scnpilot_p_inoc_scaffold_1007_52
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56211..56627
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003186C78
SnoaL-like domain protein {ECO:0000313|EMBL:AKH41476.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Alter
hypothetical protein
scnpilot_p_inoc_scaffold_1007_53
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56674..57825
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003748CA7
Uncharacterized protein {ECO:0000313|EMBL:CCW18895.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium jap
cupin
scnpilot_p_inoc_scaffold_1007_54
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57864..58100)
DNA (237bp) protein (79aa)
ribosomal large subunit pseudouridine synthase E (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3M5_NOVAD
Pseudouridine synthase {ECO:0000313|EMBL:KHL25833.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mer
Displaying items 31-54 of 54 in total

View Taxonomy