ggKbase home page

scnpilot_p_inoc_scaffold_1007

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1007_1
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..367
DNA (366bp) protein (122aa)
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7G7G7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ERP93759.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10
scnpilot_p_inoc_scaffold_1007_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

804..1169
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C7Z7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41438.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Alterer
hypothetical protein
scnpilot_p_inoc_scaffold_1007_3
unknown

Not on your lists

comp(1183..1638)
DNA (456bp) protein (152aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1007_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1766..2455)
DNA (690bp) protein (230aa)
Phosphate regulon response regulator n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WCP7_9SPHN rbh
Phosphate regulon transcriptional regulatory protein PhoB {ECO:0000313|EMBL:AKH41440.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Alt
phosphate regulon response regulator
scnpilot_p_inoc_scaffold_1007_5
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2530..3231)
DNA (702bp) protein (234aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NAW8_ERYLH rbh
phosphate transport system protein
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; E
scnpilot_p_inoc_scaffold_1007_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3231..4019)
DNA (789bp) protein (263aa)
Phosphate import ATP-binding protein PstB {ECO:0000313|EMBL:AKH41442.1}; EC=3.6.3.27 {ECO:0000313|EMBL:AKH41442.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonada
Phosphate import ATP-binding protein PstB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PSTB_NOVAD rbh
phosphate transporter ATP-binding protein
scnpilot_p_inoc_scaffold_1007_7
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4013..5263)
DNA (1251bp) protein (417aa)
Probable phosphate ABC transporter, permease protein (PstA) n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P8E1_9SPHN rbh
Probable phosphate ABC transporter, permease protein (PstA) {ECO:0000313|EMBL:EDL50592.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Er
phosphate ABC transporter permease
scnpilot_p_inoc_scaffold_1007_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5256..6641)
DNA (1386bp) protein (462aa)
Phosphate ABC transporter, permease protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P8E0_9SPHN rbh
Phosphate transport system permease protein PstC {ECO:0000313|EMBL:AKH41444.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythro
phosphate ABC transporter permease
scnpilot_p_inoc_scaffold_1007_9
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6660..7706)
DNA (1047bp) protein (349aa)
Phosphate ABC transporter substrate-binding protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZPJ8_9SPHN rbh
Phosphate ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAD47294.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphing
phosphate binding protein
scnpilot_p_inoc_scaffold_1007_10
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7791..8978)
DNA (1188bp) protein (396aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadacea
Phosphate regulon two-component histidine kinase PhoR n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZXP2_9SPHN rbh
two-component signal transduction histidine kinase
scnpilot_p_inoc_scaffold_1007_11
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9067..10635)
DNA (1569bp) protein (523aa)
Alkaline phosphatase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILT4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE53251.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
alkaline phosphatase
scnpilot_p_inoc_scaffold_1007_12
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10734..13883)
DNA (3150bp) protein (1050aa)
TonB-dependent receptor n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262B80E rbh
Uncharacterized protein {ECO:0000313|EMBL:KGO99912.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvi
TonB-dependent receptor
scnpilot_p_inoc_scaffold_1007_13
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13979..14935)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0ILJ7_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB29675.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium umm
hypothetical protein
scnpilot_p_inoc_scaffold_1007_14
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14993..15562)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0JZL9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB29674.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium umm
RNA polymerase sigma-24 factor
scnpilot_p_inoc_scaffold_1007_15
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16043..17842)
DNA (1800bp) protein (600aa)
Single-stranded-DNA-specific exonuclease n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E6U9_9SPHN rbh
recombinase RecJ rbh
Single-stranded-DNA-specific exonuclease {ECO:0000313|EMBL:EHJ62995.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
scnpilot_p_inoc_scaffold_1007_16
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17906..18397
DNA (492bp) protein (164aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IPA0_9SPHN
Flavodoxin {ECO:0000313|EMBL:KHK91938.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysie
hypothetical protein
scnpilot_p_inoc_scaffold_1007_17
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18611..19015
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B469F0
Uncharacterized protein {ECO:0000313|EMBL:KHS49153.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
hypothetical protein
scnpilot_p_inoc_scaffold_1007_18
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19012..19995)
DNA (984bp) protein (328aa)
2-nitropropane dioxygenase, NPD n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G617_NOVAD rbh
2-nitropropane dioxygenase
2-nitropropane dioxygenase, NPD {ECO:0000313|EMBL:ABD26706.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novo
scnpilot_p_inoc_scaffold_1007_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20258..20956
DNA (699bp) protein (233aa)
MOSC domain containing protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07R48_RHOP5
MOSC domain-containing protein
MOSC domain containing protein {ECO:0000313|EMBL:ABJ05586.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseu
scnpilot_p_inoc_scaffold_1007_20
unknown

Not on your lists

21868..22131
DNA (264bp) protein (88aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1007_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22654..24120
DNA (1467bp) protein (489aa)
Putative dioxygenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR63_9SPHN rbh
putative dioxygenase rbh
Putative dioxygenase {ECO:0000313|EMBL:BAK68429.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK
scnpilot_p_inoc_scaffold_1007_22
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24336..26336
DNA (2001bp) protein (667aa)
tolB; peptidase S9 prolyl oligopeptidase active site domain protein (EC:3.4.19.1) Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
tolB; peptidase S9 prolyl oligopeptidase active site domain protein (EC:3.4.19.1)
Peptidase S9 prolyl oligopeptidase active site domain protein n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QHI7_9CYAN rbh
scnpilot_p_inoc_scaffold_1007_23
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26358..27029)
DNA (672bp) protein (224aa)
Rhomboid family protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C1E9_9SPHN
Rhomboid family protein {ECO:0000313|EMBL:EIZ77602.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
rhomboid family protein
scnpilot_p_inoc_scaffold_1007_24
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27032..28714)
DNA (1683bp) protein (561aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000
2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YN00_9SPHN rbh
scnpilot_p_inoc_scaffold_1007_25
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29002..29652)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y9B3_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD49876.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
YceI
scnpilot_p_inoc_scaffold_1007_26
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29831..30850)
DNA (1020bp) protein (340aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomerore
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YMC9_9SPHN rbh
scnpilot_p_inoc_scaffold_1007_27
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30973..31422)
DNA (450bp) protein (150aa)
acetolactate synthase I/III small subunit (EC:2.2.1.6)
Acetolactate synthase 3 regulatory subunit n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8V6_9SPHN
Acetolactate synthase 3 regulatory subunit {ECO:0000313|EMBL:EGD58883.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" s
scnpilot_p_inoc_scaffold_1007_28
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31436..33184)
DNA (1749bp) protein (583aa)
Acetolactate synthase large subunit {ECO:0000313|EMBL:AKH41455.1}; EC=2.2.1.6 {ECO:0000313|EMBL:AKH41455.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Er
acetolactate synthase I/II/III large subunit (EC:2.2.1.6)
Acetolactate synthase large subunit n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A556_9SPHN rbh
scnpilot_p_inoc_scaffold_1007_29
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33488..34447)
DNA (960bp) protein (320aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate
tRNA dimethylallyltransferase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0GYL9_9SPHN rbh
tRNA delta(2)-isopentenylpyrophosphate transferase
scnpilot_p_inoc_scaffold_1007_30
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34524..35321
DNA (798bp) protein (266aa)
phosphoserine phosphatase (EC:3.1.3.3)
Phosphoserine phosphatase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y9A8_9SPHN rbh
Phosphoserine phosphatase {ECO:0000313|EMBL:GAD49871.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphin
Displaying items 1-30 of 54 in total

View Taxonomy