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scnpilot_dereplicated_Eukaryote_unknown_15

SCNpilot_P_inoc_unknown_51_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.62 Longest contig: 48.83 Kbp Bin length: 1.07 Mbp GC content: 51.36 %
Contigs count: 183 Features count: 909 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 BSCG 2 / 51 ASCG 0 / 38

Description

not clear on coverage ESOM

Displaying items 51-100 of 183 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_10665 4 4485 bp 58.86 3.81 74.18
scnpilot_p_inoc_scaffold_4059 4 8705 bp 54.88 4.38 73.89
scnpilot_p_inoc_scaffold_7980 4 5502 bp 52.40 4.20 73.83
scnpilot_p_inoc_scaffold_9347
Domain: Bacteria (50%)
4 4914 bp 42.21 4.55 73.44
scnpilot_p_inoc_scaffold_11641
Class: Alphaproteobacteria (50%)
4 4206 bp 52.57 2.85 73.32
scnpilot_p_inoc_scaffold_7441 6 5777 bp 59.51 4.54 72.96
scnpilot_p_inoc_scaffold_8292
Species: Candidatus Paracaedibacter acanthamoebae (100%)
6 5348 bp 40.80 2.50 72.81
scnpilot_p_inoc_scaffold_11691 6 4195 bp 44.41 3.11 72.73
scnpilot_p_inoc_scaffold_8696 4 5174 bp 52.73 3.94 72.65
scnpilot_p_inoc_scaffold_3649 7 9379 bp 50.60 4.03 72.64
scnpilot_p_inoc_scaffold_8981 3 5067 bp 58.06 2.99 72.17
scnpilot_p_inoc_scaffold_7907 4 5545 bp 49.00 7.28 72.01
scnpilot_p_inoc_scaffold_10122 4 4658 bp 49.79 3.41 71.62
scnpilot_p_inoc_scaffold_10490 7 4542 bp 58.78 5.65 71.53
scnpilot_p_inoc_scaffold_10341
Species: Brachyspira murdochii (50%)
2 4595 bp 56.19 3.53 71.10
scnpilot_p_inoc_scaffold_11470
Domain: Eukaryota (50%)
4 4252 bp 58.65 5.15 70.98
scnpilot_p_inoc_scaffold_6224 4 6527 bp 49.62 4.23 70.92
scnpilot_p_inoc_scaffold_9142 3 4998 bp 49.90 3.96 70.11
scnpilot_p_inoc_scaffold_10708
Species: Streptococcus pneumoniae (50%)
2 4471 bp 49.90 3.46 69.98
scnpilot_p_inoc_scaffold_7905
Genus: Streptococcus (66.67%)
3 5548 bp 51.60 4.43 69.97
scnpilot_p_inoc_scaffold_11869 4 4152 bp 54.36 4.23 69.87
scnpilot_p_inoc_scaffold_8392 6 5306 bp 52.39 3.59 68.75
scnpilot_p_inoc_scaffold_12036 3 4115 bp 52.83 4.67 68.17
scnpilot_p_inoc_scaffold_10138 6 4654 bp 54.17 4.45 67.68
scnpilot_p_inoc_scaffold_3872 12 10335 bp 51.42 3.86 67.46
scnpilot_p_inoc_scaffold_10395
Species: Lachancea thermotolerans (100%)
1 4576 bp 49.52 4.03 66.48
scnpilot_p_inoc_scaffold_7921 7 5538 bp 48.57 3.85 66.47
scnpilot_p_inoc_scaffold_12452
Species: Rhizobium tropici (50%)
2 4014 bp 58.52 3.59 65.92
scnpilot_p_inoc_scaffold_6904 9 7686 bp 50.20 3.51 65.65
scnpilot_p_inoc_scaffold_9898
Species: Lactobacillus kisonensis (50%)
2 4738 bp 60.55 3.39 65.41
scnpilot_p_inoc_scaffold_11485 3 4247 bp 54.18 3.74 64.56
scnpilot_p_inoc_scaffold_9355 7 4912 bp 55.66 3.85 64.43
scnpilot_p_inoc_scaffold_9294 3 4938 bp 54.54 4.37 62.76
scnpilot_p_inoc_scaffold_7846 5 5579 bp 55.57 4.79 62.59
scnpilot_p_inoc_scaffold_7643 5 5680 bp 54.68 4.91 62.17
scnpilot_p_inoc_scaffold_7266 12 5872 bp 49.15 3.45 60.90
scnpilot_p_inoc_scaffold_14922 4 4271 bp 59.70 4.50 60.90
scnpilot_p_inoc_scaffold_14688 3 4062 bp 56.50 3.47 60.86
scnpilot_p_inoc_scaffold_8971 4 5071 bp 53.36 3.31 60.82
scnpilot_p_inoc_scaffold_4835 9 7771 bp 48.66 3.42 60.30
scnpilot_p_inoc_scaffold_4585 7 8053 bp 52.92 4.69 59.31
scnpilot_p_inoc_scaffold_12487 3 4002 bp 53.10 5.47 59.30
scnpilot_p_inoc_scaffold_8529
Species: Entamoeba invadens (50%)
2 5239 bp 53.52 3.38 58.75
scnpilot_p_inoc_scaffold_11984
Species: Strigamia maritima (50%)
2 4125 bp 55.10 4.44 58.62
scnpilot_p_inoc_scaffold_12123 5 4093 bp 54.73 3.92 58.27
scnpilot_p_inoc_scaffold_12303 3 4046 bp 56.60 3.82 58.13
scnpilot_p_inoc_scaffold_4395 5 8291 bp 55.28 4.07 57.97
scnpilot_p_inoc_scaffold_4879 11 9323 bp 53.02 3.86 57.60
scnpilot_p_inoc_scaffold_5668 6 6979 bp 45.89 2.84 57.39
scnpilot_p_inoc_scaffold_10435 3 4564 bp 53.22 4.01 57.32
Displaying items 51-100 of 183 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.