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scnpilot_dereplicated_Eukaryote_unknown_15

SCNpilot_P_inoc_unknown_51_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.62 Longest contig: 48.83 Kbp Bin length: 1.07 Mbp GC content: 51.36 %
Contigs count: 183 Features count: 909 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 BSCG 2 / 51 ASCG 0 / 38

Description

not clear on coverage ESOM

Displaying items 101-150 of 183 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_11910 4 4142 bp 48.96 4.20 74.38
scnpilot_p_inoc_scaffold_7635 4 5686 bp 52.99 4.41 51.02
scnpilot_p_inoc_scaffold_7907 4 5545 bp 49.00 7.28 72.01
scnpilot_p_inoc_scaffold_5852
Class: Neoptera (50%)
4 6819 bp 53.15 4.73 43.69
scnpilot_p_inoc_scaffold_6224 4 6527 bp 49.62 4.23 70.92
scnpilot_p_inoc_scaffold_10122 4 4658 bp 49.79 3.41 71.62
scnpilot_p_inoc_scaffold_8368 4 5317 bp 49.24 3.86 78.43
scnpilot_p_inoc_scaffold_4059 4 8705 bp 54.88 4.38 73.89
scnpilot_p_inoc_scaffold_11470
Domain: Eukaryota (50%)
4 4252 bp 58.65 5.15 70.98
scnpilot_p_inoc_scaffold_7689 4 5656 bp 50.64 4.40 80.25
scnpilot_p_inoc_scaffold_14922 4 4271 bp 59.70 4.50 60.90
scnpilot_p_inoc_scaffold_8387 4 5308 bp 53.79 4.24 42.84
scnpilot_p_inoc_scaffold_10665 4 4485 bp 58.86 3.81 74.18
scnpilot_p_inoc_scaffold_8654 4 5188 bp 50.23 4.05 94.49
scnpilot_p_inoc_scaffold_4859 4 7740 bp 53.33 4.65 49.96
scnpilot_p_inoc_scaffold_7980 4 5502 bp 52.40 4.20 73.83
scnpilot_p_inoc_scaffold_8413
Species: Rhizobium sp. H41 (75%)
4 5292 bp 55.84 2.75 82.60
scnpilot_p_inoc_scaffold_10686 4 4478 bp 55.94 4.52 37.18
scnpilot_p_inoc_scaffold_4364 4 8325 bp 53.14 3.68 74.27
scnpilot_p_inoc_scaffold_11275 4 4307 bp 52.17 3.73 42.98
scnpilot_p_inoc_scaffold_8696 4 5174 bp 52.73 3.94 72.65
scnpilot_p_inoc_scaffold_8712 3 5169 bp 59.62 4.88 54.27
scnpilot_p_inoc_scaffold_8981 3 5067 bp 58.06 2.99 72.17
scnpilot_p_inoc_scaffold_9294 3 4938 bp 54.54 4.37 62.76
scnpilot_p_inoc_scaffold_10542 3 4522 bp 49.18 3.91 45.31
scnpilot_p_inoc_scaffold_8067 3 5449 bp 54.80 4.38 24.17
scnpilot_p_inoc_scaffold_9142 3 4998 bp 49.90 3.96 70.11
scnpilot_p_inoc_scaffold_7905
Genus: Streptococcus (66.67%)
3 5548 bp 51.60 4.43 69.97
scnpilot_p_inoc_scaffold_11954 3 4131 bp 49.21 4.18 21.64
scnpilot_p_inoc_scaffold_11701 3 4193 bp 50.04 3.36 56.95
scnpilot_p_inoc_scaffold_12487 3 4002 bp 53.10 5.47 59.30
scnpilot_p_inoc_scaffold_8877 3 5110 bp 55.36 3.55 46.03
scnpilot_p_inoc_scaffold_8632 3 5197 bp 52.76 3.55 74.52
scnpilot_p_inoc_scaffold_11485 3 4247 bp 54.18 3.74 64.56
scnpilot_p_inoc_scaffold_10926
Species: Alcaligenes faecalis (100%)
3 4405 bp 56.59 2.62 100.11
scnpilot_p_inoc_scaffold_9983 3 4709 bp 53.39 3.92 44.40
scnpilot_p_inoc_scaffold_14688 3 4062 bp 56.50 3.47 60.86
scnpilot_p_inoc_scaffold_12036 3 4115 bp 52.83 4.67 68.17
scnpilot_p_inoc_scaffold_12039 3 4115 bp 52.10 4.01 29.09
scnpilot_p_inoc_scaffold_10435 3 4564 bp 53.22 4.01 57.32
scnpilot_p_inoc_scaffold_12303 3 4046 bp 56.60 3.82 58.13
scnpilot_p_inoc_scaffold_9751 3 4781 bp 52.00 3.92 50.45
scnpilot_p_inoc_scaffold_7227
Phylum: Ascomycota (66.67%)
3 5892 bp 50.93 3.67 40.07
scnpilot_p_inoc_scaffold_10448 3 4558 bp 57.42 4.08 52.65
scnpilot_p_inoc_scaffold_4128
Class: Bacilli (66.67%)
3 8616 bp 53.95 3.85 49.76
scnpilot_p_inoc_scaffold_10716 3 4468 bp 50.04 4.53 42.03
scnpilot_p_inoc_scaffold_11033
Species: Phytophthora parasitica (50%)
2 4376 bp 52.38 4.87 32.84
scnpilot_p_inoc_scaffold_11571
Species: Veillonella sp. oral taxon 158 (50%)
2 4224 bp 48.30 3.05 57.03
scnpilot_p_inoc_scaffold_9041
Species: CG_Delta_07 (50%)
2 5044 bp 55.87 4.16 51.69
scnpilot_p_inoc_scaffold_10764 2 4450 bp 52.34 4.38 99.78
Displaying items 101-150 of 183 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.