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scnpilot_dereplicated_Eukaryote_unknown_15

SCNpilot_P_inoc_unknown_51_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.62 Longest contig: 48.83 Kbp Bin length: 1.07 Mbp GC content: 51.36 %
Contigs count: 183 Features count: 909 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 BSCG 2 / 51 ASCG 0 / 38

Description

not clear on coverage ESOM

Displaying items 101-150 of 183 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_6714 7 6201 bp 47.88 3.97 33.43
scnpilot_p_inoc_scaffold_7321 4 5840 bp 48.37 3.98 38.42
scnpilot_p_inoc_scaffold_5927 5 6754 bp 52.16 3.98 43.00
scnpilot_p_inoc_scaffold_12039 3 4115 bp 52.10 4.01 29.09
scnpilot_p_inoc_scaffold_10435 3 4564 bp 53.22 4.01 57.32
scnpilot_p_inoc_scaffold_9773 7 4777 bp 37.70 4.02 40.38
scnpilot_p_inoc_scaffold_3649 7 9379 bp 50.60 4.03 72.64
scnpilot_p_inoc_scaffold_10395
Species: Lachancea thermotolerans (100%)
1 4576 bp 49.52 4.03 66.48
scnpilot_p_inoc_scaffold_8654 4 5188 bp 50.23 4.05 94.49
scnpilot_p_inoc_scaffold_9760 7 4778 bp 56.36 4.05 75.28
scnpilot_p_inoc_scaffold_4395 5 8291 bp 55.28 4.07 57.97
scnpilot_p_inoc_scaffold_10448 3 4558 bp 57.42 4.08 52.65
scnpilot_p_inoc_scaffold_7514 7 5742 bp 54.70 4.10 49.37
scnpilot_p_inoc_scaffold_7760 1 5624 bp 56.13 4.11 99.96
scnpilot_p_inoc_scaffold_7584 4 5710 bp 54.15 4.12 78.39
scnpilot_p_inoc_scaffold_6593 7 6969 bp 45.17 4.13 42.70
scnpilot_p_inoc_scaffold_5034 9 7557 bp 48.22 4.13 56.41
scnpilot_p_inoc_scaffold_9041
Species: CG_Delta_07 (50%)
2 5044 bp 55.87 4.16 51.69
scnpilot_p_inoc_scaffold_10993 4 4385 bp 46.66 4.17 39.48
scnpilot_p_inoc_scaffold_8543 5 5234 bp 52.67 4.18 54.57
scnpilot_p_inoc_scaffold_11954 3 4131 bp 49.21 4.18 21.64
scnpilot_p_inoc_scaffold_11910 4 4142 bp 48.96 4.20 74.38
scnpilot_p_inoc_scaffold_7980 4 5502 bp 52.40 4.20 73.83
scnpilot_p_inoc_scaffold_11869 4 4152 bp 54.36 4.23 69.87
scnpilot_p_inoc_scaffold_13019 5 5602 bp 50.16 4.23 42.04
scnpilot_p_inoc_scaffold_6224 4 6527 bp 49.62 4.23 70.92
scnpilot_p_inoc_scaffold_8387 4 5308 bp 53.79 4.24 42.84
scnpilot_p_inoc_scaffold_3981
Species: Camponotus floridanus (50%)
2 8829 bp 52.11 4.25 56.78
scnpilot_p_inoc_scaffold_7591 4 5707 bp 49.52 4.28 76.91
scnpilot_p_inoc_scaffold_8647 5 5191 bp 52.73 4.31 43.81
scnpilot_p_inoc_scaffold_9961
Species: Phytophthora parasitica (50%)
2 4715 bp 52.73 4.33 35.06
scnpilot_p_inoc_scaffold_9294 3 4938 bp 54.54 4.37 62.76
scnpilot_p_inoc_scaffold_10764 2 4450 bp 52.34 4.38 99.78
scnpilot_p_inoc_scaffold_8067 3 5449 bp 54.80 4.38 24.17
scnpilot_p_inoc_scaffold_4059 4 8705 bp 54.88 4.38 73.89
scnpilot_p_inoc_scaffold_13611 5 5073 bp 52.57 4.38 44.29
scnpilot_p_inoc_scaffold_9246
Species: Capsaspora owczarzaki (100%)
1 4960 bp 55.00 4.39 45.30
scnpilot_p_inoc_scaffold_7689 4 5656 bp 50.64 4.40 80.25
scnpilot_p_inoc_scaffold_4958 7 7646 bp 53.40 4.41 43.00
scnpilot_p_inoc_scaffold_7635 4 5686 bp 52.99 4.41 51.02
scnpilot_p_inoc_scaffold_8377
Species: Galdieria sulphuraria (50%)
2 5312 bp 59.96 4.41 79.69
scnpilot_p_inoc_scaffold_9109 4 5013 bp 53.50 4.43 49.01
scnpilot_p_inoc_scaffold_7905
Genus: Streptococcus (66.67%)
3 5548 bp 51.60 4.43 69.97
scnpilot_p_inoc_scaffold_11984
Species: Strigamia maritima (50%)
2 4125 bp 55.10 4.44 58.62
scnpilot_p_inoc_scaffold_10138 6 4654 bp 54.17 4.45 67.68
scnpilot_p_inoc_scaffold_7579
Species: Guillardia theta (50%)
2 5714 bp 54.20 4.46 50.67
scnpilot_p_inoc_scaffold_11573 5 4224 bp 48.20 4.47 36.93
scnpilot_p_inoc_scaffold_14922 4 4271 bp 59.70 4.50 60.90
scnpilot_p_inoc_scaffold_10686 4 4478 bp 55.94 4.52 37.18
scnpilot_p_inoc_scaffold_10716 3 4468 bp 50.04 4.53 42.03
Displaying items 101-150 of 183 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.