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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 2751-2800 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_1875 10 16009 bp 60.15 4.90 63.70
scnpilot_p_inoc_scaffold_4642 10 7977 bp 59.31 4.29 66.57
scnpilot_p_inoc_scaffold_3468 10 9725 bp 56.13 4.72 51.98
scnpilot_p_inoc_scaffold_2253 10 13605 bp 57.05 4.63 59.40
scnpilot_p_inoc_scaffold_5440 10 11107 bp 62.90 4.73 72.01
scnpilot_p_inoc_scaffold_1407 11 21305 bp 61.00 4.53 66.45
scnpilot_p_inoc_scaffold_7271 11 5869 bp 56.96 4.65 53.11
scnpilot_p_inoc_scaffold_4419 11 8267 bp 55.46 4.55 62.67
scnpilot_p_inoc_scaffold_6095 11 11688 bp 60.76 4.22 65.63
scnpilot_p_inoc_scaffold_2296 11 17091 bp 62.51 4.94 73.32
scnpilot_p_inoc_scaffold_1952 11 15415 bp 60.28 4.35 73.12
scnpilot_p_inoc_scaffold_2569 11 12231 bp 63.78 4.82 78.24
scnpilot_p_inoc_scaffold_3030 11 10674 bp 53.55 4.50 48.29
scnpilot_p_inoc_scaffold_2074 11 14622 bp 56.98 4.33 79.59
scnpilot_p_inoc_scaffold_2857 11 11189 bp 58.79 3.99 59.52
scnpilot_p_inoc_scaffold_1742 11 18202 bp 57.48 4.99 72.67
scnpilot_p_inoc_scaffold_7089 11 5971 bp 56.12 3.39 43.96
scnpilot_p_inoc_scaffold_2615 11 12077 bp 62.64 4.33 81.95
scnpilot_p_inoc_scaffold_3321 11 10060 bp 60.08 4.23 73.33
scnpilot_p_inoc_scaffold_10060 11 6698 bp 67.15 5.17 84.74
scnpilot_p_inoc_scaffold_4766 11 10770 bp 60.79 4.32 77.02
scnpilot_p_inoc_scaffold_3336 11 10016 bp 56.95 4.58 57.39
scnpilot_p_inoc_scaffold_2633 11 11989 bp 54.46 4.34 73.79
scnpilot_p_inoc_scaffold_2909 11 11046 bp 56.41 4.62 54.81
scnpilot_p_inoc_scaffold_3622 11 9431 bp 54.60 4.66 57.58
scnpilot_p_inoc_scaffold_1561 11 18997 bp 64.44 5.08 79.91
scnpilot_p_inoc_scaffold_2946 11 10923 bp 57.40 4.55 66.44
scnpilot_p_inoc_scaffold_4315
Domain: Eukaryota (54.55%)
11 10625 bp 58.42 4.86 64.49
scnpilot_p_inoc_scaffold_5886 11 14705 bp 65.00 4.95 78.26
scnpilot_p_inoc_scaffold_1587 11 18683 bp 62.13 4.93 78.62
scnpilot_p_inoc_scaffold_2708 11 11730 bp 57.20 4.12 54.99
scnpilot_p_inoc_scaffold_6253 11 6508 bp 57.10 4.17 67.67
scnpilot_p_inoc_scaffold_2456 11 12687 bp 57.45 4.36 63.89
scnpilot_p_inoc_scaffold_3163 11 10358 bp 56.18 4.11 78.72
scnpilot_p_inoc_scaffold_2463 11 17157 bp 63.55 4.54 77.22
scnpilot_p_inoc_scaffold_4087 11 12431 bp 56.54 4.66 54.52
scnpilot_p_inoc_scaffold_3423 11 9813 bp 55.44 4.56 63.62
scnpilot_p_inoc_scaffold_3185 11 11029 bp 62.43 4.53 78.15
scnpilot_p_inoc_scaffold_1632 11 18190 bp 59.49 4.21 66.78
scnpilot_p_inoc_scaffold_2513 12 12458 bp 57.32 4.58 65.77
scnpilot_p_inoc_scaffold_2780 12 11471 bp 56.76 4.29 58.22
scnpilot_p_inoc_scaffold_1916 12 15698 bp 58.12 4.01 64.61
scnpilot_p_inoc_scaffold_5214 12 7382 bp 58.43 3.66 64.90
scnpilot_p_inoc_scaffold_2547 12 12317 bp 60.18 4.94 74.48
scnpilot_p_inoc_scaffold_1441 12 20743 bp 63.66 4.71 74.93
scnpilot_p_inoc_scaffold_1963 12 15349 bp 60.13 4.18 80.27
scnpilot_p_inoc_scaffold_3842 12 9028 bp 51.84 3.75 70.12
scnpilot_p_inoc_scaffold_2430 12 12766 bp 62.20 4.66 79.36
scnpilot_p_inoc_scaffold_1575 12 18834 bp 60.99 4.67 71.17
scnpilot_p_inoc_scaffold_4842 12 7764 bp 58.60 4.98 78.48
Displaying items 2751-2800 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.