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scnpilot_p_inoc_scaffold_176_curated

Search features with annotation key words

Displaying items 121-150 of 191 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_176_curated_121
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(145684..147660)
DNA (1977bp) protein (659aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJC9_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU61997.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_176_curated_122
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(147665..148339)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C1Q9_SPHS2
Uncharacterized protein {ECO:0000313|EMBL:KIA93358.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_176_curated_123
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(148446..149720)
DNA (1275bp) protein (425aa)
DNA repair protein RadA n=1 Tax=Segetibacter koreensis RepID=UPI0003782CDF
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_176_curated_124
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(150091..151776)
DNA (1686bp) protein (562aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
Transcription termination factor Rho n=1 Tax=Niabella soli DSM 19437 RepID=H1NTZ1_9SPHI
transcription termination factor Rho; K03628 transcription termination factor Rho
scnpilot_p_inoc_scaffold_176_curated_125
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(151919..152998)
DNA (1080bp) protein (360aa)
Outer membrane insertion C-terminal signal n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PCC6_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:GAO43626.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
outer membrane insertion C-terminal signal
scnpilot_p_inoc_scaffold_176_curated_126
Galbibacter marinus, Galbibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(153023..153448)
DNA (426bp) protein (142aa)
PilB-like protein; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
methionine-R-sulfoxide reductase n=1 Tax=Riemerella columbina RepID=UPI00037EC763
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:EKF56270.1}; TaxID=555500 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Galbibacter.;" source="Galbibacter marinus.;"
scnpilot_p_inoc_scaffold_176_curated_127
unknown

Not on your lists

comp(153459..154016)
DNA (558bp) protein (186aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_176_curated_128
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

154196..155041
DNA (846bp) protein (282aa)
Cell division protein FtsX n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQ64_CHIPD
hypothetical protein; K09811 cell division transport system permease protein
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_176_curated_129
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

155060..155767
DNA (708bp) protein (236aa)
Octanoyltransferase (EC:2.3.1.181); K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181]
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformi
Octanoyltransferase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EMS6_RUNSL
scnpilot_p_inoc_scaffold_176_curated_130
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

155806..156798
DNA (993bp) protein (331aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
3-oxoacyl-ACP synthase (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Pedobacter sp. BAL39 RepID=A6EBH9_9SPHI
scnpilot_p_inoc_scaffold_176_curated_131
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

156892..157398
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PS21_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU60815.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_176_curated_132
Elizabethkingia meningoseptica, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

157480..157809
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0NSV5_ELIME
Uncharacterized protein {ECO:0000313|EMBL:EQB93230.1}; TaxID=1355388 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia meningoseptica 502.;"
hypothetical protein; K09946 hypothetical protein
scnpilot_p_inoc_scaffold_176_curated_133
unknown

Not on your lists

157842..158324
DNA (483bp) protein (161aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_176_curated_134
Bacteroides coprosuis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

158420..159442
DNA (1023bp) protein (341aa)
TQO small subunit DoxD domain-containing protein n=1 Tax=Bacteroides coprosuis DSM 18011 RepID=F3ZNC1_9BACE
TQO small subunit DoxD domain-containing protein {ECO:0000313|EMBL:EGJ71461.1}; TaxID=679937 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprosuis DSM 18011.;"
hypothetical protein
scnpilot_p_inoc_scaffold_176_curated_135
unknown

Not on your lists

comp(159523..160371)
DNA (849bp) protein (283aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_176_curated_136
unknown

Not on your lists

comp(160383..161222)
DNA (840bp) protein (280aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_176_curated_137
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(161225..161707)
DNA (483bp) protein (161aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIN8_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW02891.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_176_curated_138
Ornithobacterium rhinotracheale, Ornithobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(162304..162804)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Ornithobacterium rhinotracheale (strain ATCC 51463 / DSM 15997 / CCUG 23171 / LMG 9086) RepID=I3ZZM6_ORNRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL97160.1}; TaxID=867902 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Ornithobacterium.;" source="Ornithobacterium rhinotracheale (strain ATCC 51463 / DSM 15997 / CCUG; 23171 / LMG 9086).;"
scnpilot_p_inoc_scaffold_176_curated_139
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(162925..163689)
DNA (765bp) protein (255aa)
Methyltransferase type 11 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IBN9_FLUTR
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:AEA45365.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_p_inoc_scaffold_176_curated_140
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

164154..165050
DNA (897bp) protein (299aa)
phosphatidylserine decarboxylase (EC:4.1.1.65); K01613 phosphatidylserine decarboxylase [EC:4.1.1.65]
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|SAAS:SAAS00093350};; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
Phosphatidylserine decarboxylase n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S8B2_PEDSD
scnpilot_p_inoc_scaffold_176_curated_141
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

165277..166695
DNA (1419bp) protein (473aa)
Fumarate hydratase class II (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2]
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
Fumarate hydratase class II n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EHI0_RUNSL
scnpilot_p_inoc_scaffold_176_curated_142
Imtechella halotolerans, Imtechella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

167118..168104
DNA (987bp) protein (329aa)
Helix-turn-helix, type 11 domain-containing protein n=1 Tax=Imtechella halotolerans K1 RepID=I0W5J7_9FLAO
Helix-turn-helix, type 11 domain-containing protein {ECO:0000313|EMBL:EID71663.1}; TaxID=946077 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Imtechella.;" source="Imtechella halotolerans K1.;"
helix-turn-helix, type 11 domain-containing protein
scnpilot_p_inoc_scaffold_176_curated_143
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(168127..168651)
DNA (525bp) protein (175aa)
Ferritin {ECO:0000256|RuleBase:RU361145}; EC=1.16.3.2 {ECO:0000256|RuleBase:RU361145};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ferroxidase; K02217 ferritin [EC:1.16.3.1]
Ferroxidase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PTZ0_CHIPD
scnpilot_p_inoc_scaffold_176_curated_144
Prevotella oulorum, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(168699..169532)
DNA (834bp) protein (278aa)
Putative uncharacterized protein n=1 Tax=Prevotella oulorum F0390 RepID=G1WD61_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EGV29955.1}; TaxID=702438 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella oulorum F0390.;"
hypothetical protein; K07090
scnpilot_p_inoc_scaffold_176_curated_145
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(169615..170754)
DNA (1140bp) protein (380aa)
Aminodeoxyfutalosine synthase {ECO:0000256|HAMAP-Rule:MF_00993}; Short=AFL synthase {ECO:0000256|HAMAP-Rule:MF_00993};; Short=Aminofutalosine synthase {ECO:0000256|HAMAP-Rule:MF_00993};; EC=2.5.1.120 {ECO:0000256|HAMAP-Rule:MF_00993};; Menaquinone biosynthetic enzyme MqnE {ECO:0000256|HAMAP-Rule:MF_00993}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034)
Radical SAM domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PLT6_CHIPD
radical SAM protein
scnpilot_p_inoc_scaffold_176_curated_146
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

171119..171847
DNA (729bp) protein (243aa)
Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VYW7_DYAFD
succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; K00241 succinate dehydrogenase cytochrome b556 subunit
Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family {ECO:0000313|EMBL:ACT95173.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_176_curated_147
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

171944..173920
DNA (1977bp) protein (659aa)
Succinate dehydrogenase {ECO:0000313|EMBL:KIC90019.1}; EC=1.3.5.1 {ECO:0000313|EMBL:KIC90019.1};; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
succinate dehydrogenase or fumarate reductase, flavoprotein subunit; K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE81_NIAKG
scnpilot_p_inoc_scaffold_176_curated_148
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

174031..174795
DNA (765bp) protein (255aa)
succinate dehydrogenase and fumarate reductase iron-sulfur protein; K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1]
succinate dehydrogenase n=1 Tax=Niabella aurantiaca RepID=UPI00035FEB29
Fumarate reductase {ECO:0000313|EMBL:KIC90020.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
scnpilot_p_inoc_scaffold_176_curated_149
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(174904..176040)
DNA (1137bp) protein (379aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FY05_9SPHI
Permease {ECO:0000313|EMBL:AIM38224.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
hypothetical protein
scnpilot_p_inoc_scaffold_176_curated_150
Bacteroides sp. CAG:714, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(176080..176532)
DNA (453bp) protein (151aa)
cell envelope biogenesis protein TonB n=1 Tax=Bacteroides barnesiae RepID=UPI00036F8A4D
TonB family protein {ECO:0000313|EMBL:CDD32181.1}; TaxID=1262749 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:714.;"
TonB family protein; K03832 periplasmic protein TonB
Displaying items 121-150 of 191 in total

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