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scnpilot_p_inoc_scaffold_4054_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_4054_curated_1
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..983)
DNA (981bp) protein (327aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
3-isopropylmalate dehydrogenase n=2 Tax=Acidovorax RepID=B9MDL2_ACIET
3-isopropylmalate dehydrogenase-like
scnpilot_p_inoc_scaffold_4054_curated_2
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1097..1753)
DNA (657bp) protein (219aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase small subunit n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003767941
scnpilot_p_inoc_scaffold_4054_curated_3
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1765..3186)
DNA (1422bp) protein (474aa)
isopropylmalate isomerase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
3-isopropylmalate dehydratase large subunit n=3 Tax=Acidovorax RepID=LEUC_ACIAC rbh
scnpilot_p_inoc_scaffold_4054_curated_4
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3206..4141)
DNA (936bp) protein (312aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037D7C63
LysR family transcriptional regulator {ECO:0000313|EMBL:GAD24319.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_4054_curated_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4313..4483)
DNA (171bp) protein (57aa)
50S ribosomal protein L33 n=2 Tax=Alicycliphilus denitrificans RepID=E8TQ12_ALIDB
ribosomal protein l33; K02913 large subunit ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_4054_curated_6
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4506..4739)
DNA (234bp) protein (78aa)
50S ribosomal protein L28 n=9 Tax=Comamonadaceae RepID=RL28_ACIET
ribosomal protein l28; K02902 large subunit ribosomal protein L28
50S ribosomal protein L28 {ECO:0000255|HAMAP-Rule:MF_00373}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_4054_curated_7
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4898..5854)
DNA (957bp) protein (319aa)
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Thioredoxin reductase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WB78_ACISJ
scnpilot_p_inoc_scaffold_4054_curated_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5979..8318
DNA (2340bp) protein (780aa)
cell division protein FtsK n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036201DE
Cell divisionftsk/spoiiie {ECO:0000313|EMBL:GAD20600.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
DNA translocase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
scnpilot_p_inoc_scaffold_4054_curated_9
Halomonas anticariensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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8335..9609
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2KPG7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EPC03982.1}; TaxID=1121939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
sugar ABC transport system, periplasmic substrate-binding protein
scnpilot_p_inoc_scaffold_4054_curated_10
Halomonas anticariensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9621..10955
DNA (1335bp) protein (445aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1121939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
Uncharacterized protein n=1 Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2LH54_9GAMM
hybrid histidine protein kinase
scnpilot_p_inoc_scaffold_4054_curated_11
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10958..11587
DNA (630bp) protein (210aa)
Outer-membrane lipoprotein carrier protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WB76_ACISJ
outer membrane lipoprotein carrier protein LolA; K03634 outer membrane lipoprotein carrier protein
Outer-membrane lipoprotein carrier protein {ECO:0000256|HAMAP-Rule:MF_00240, ECO:0000256|SAAS:SAAS00028972}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_4054_curated_12
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11692..12333)
DNA (642bp) protein (214aa)
Two component LuxR family transcriptional regulator n=1 Tax=Acidovorax sp. KKS102 RepID=K0I7X7_9BURK
two component LuxR family transcriptional regulator
Two component LuxR family transcriptional regulator {ECO:0000313|EMBL:AFU45051.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_4054_curated_13
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12428..14605)
DNA (2178bp) protein (726aa)
Sensor histidine kinase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HW32_9BURK
sensor histidine kinase
Sensor histidine kinase {ECO:0000313|EMBL:AFU45052.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_4054_curated_14
GWB2_Chloroflexi_54_36_curated, Chloroflexi, Bacteria

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14788..15435
DNA (648bp) protein (216aa)
Putative uncharacterized protein id=1710251 bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
hypothetical protein
Tax=GWB2_Chloroflexi_54_36_curated
scnpilot_p_inoc_scaffold_4054_curated_15
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15440..16498)
DNA (1059bp) protein (353aa)
Tax=CG_Thiomicrospira_01
scnpilot_p_inoc_scaffold_4054_curated_16
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16665..17729
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HPX6_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45053.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_4054_curated_17
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17836..18192)
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KV53_9BURK
hypothetical protein; K08987 putative membrane protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_4054_curated_18
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18287..18865)
DNA (579bp) protein (193aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
alkylhydroperoxidase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035F45EB
hypothetical protein
scnpilot_p_inoc_scaffold_4054_curated_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18904..19893)
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037805B9
NADPH:quinone reductase {ECO:0000313|EMBL:GAD20605.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
alcohol dehydrogenase
scnpilot_p_inoc_scaffold_4054_curated_20
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19915..20460)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000368AFA0
Transcriptional regulator {ECO:0000313|EMBL:GAD20606.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
dhaR; TetR family transcriptional regulator
Displaying 20 items

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