ggKbase home page

scnpilot_p_inoc_scaffold_2411_curated

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2411_curated_1
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..956
DNA (954bp) protein (318aa)
FAD-binding monooxygenase protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM76_9BURK
FAD-binding monooxygenase protein {ECO:0000313|EMBL:EIK90316.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
FAD-binding monooxygenase protein
scnpilot_p_inoc_scaffold_2411_curated_2
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1003..1527
DNA (525bp) protein (175aa)
Thioesterase superfamily protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM75_9BURK
Thioesterase superfamily protein {ECO:0000313|EMBL:EIK90315.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
acyl-CoA hydrolase
scnpilot_p_inoc_scaffold_2411_curated_3
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1736..2233
DNA (498bp) protein (166aa)
signal peptide protein id=12496633 bin=THIO_MID species=Herbaspirillum seropedicae genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
signal peptide protein
Signal peptide protein {ECO:0000313|EMBL:EOA04301.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
scnpilot_p_inoc_scaffold_2411_curated_4
Burkholderia lata, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2247..2939
DNA (693bp) protein (231aa)
P pilus assembly protein chaperone PapD-like protein; K07346 fimbrial chaperone protein id=12496634 bin=THIO_MID species=Burkholderia ambifaria genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
P pilus assembly protein chaperone PapD-like protein; K07346 fimbrial chaperone protein
P pilus assembly protein chaperone PapD-like protein {ECO:0000313|EMBL:ABB07992.1}; TaxID=482957 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194; / 383).;"
scnpilot_p_inoc_scaffold_2411_curated_5
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2920..5214
DNA (2295bp) protein (765aa)
fimbrial biogenesis outer membrane usher protein; K07347 outer membrane usher protein id=12496635 bin=THIO_MID species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
fimbrial biogenesis outer membrane usher protein; K07347 outer membrane usher protein
Fimbrial biogenesis outer membrane usher protein {ECO:0000313|EMBL:ABM35469.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
scnpilot_p_inoc_scaffold_2411_curated_6
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5211..5708
DNA (498bp) protein (166aa)
hypothetical protein id=12496637 bin=THIO_MID species=Singularimonas variicoloris genus=Singularimonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Spore coat U domain-containing protein {ECO:0000313|EMBL:EIJ47803.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
spore coat U domain-containing protein
scnpilot_p_inoc_scaffold_2411_curated_7
unknown

Not on your lists

5788..8184
DNA (2397bp) protein (799aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2411_curated_8
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8252..9118
DNA (867bp) protein (289aa)
Squalene synthase hpnd {ECO:0000313|EMBL:EIK90314.1}; EC=2.5.1.32 {ECO:0000313|EMBL:EIK90314.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
farnesyl-diphosphate farnesyltransferase (EC:2.5.1.21); K02291 phytoene synthase [EC:2.5.1.32]
Squalene synthase hpnd n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM74_9BURK
scnpilot_p_inoc_scaffold_2411_curated_9
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9115..10497
DNA (1383bp) protein (461aa)
Squalene-associated fad-dependent desaturase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM73_9BURK
Squalene-associated fad-dependent desaturase {ECO:0000313|EMBL:EIK90313.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
squalene-associated FAD-dependent desaturase
scnpilot_p_inoc_scaffold_2411_curated_10
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10658..11119
DNA (462bp) protein (154aa)
SH3, type 3 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM72_9BURK
SH3, type 3 {ECO:0000313|EMBL:EIK90312.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
SH3, type 3
scnpilot_p_inoc_scaffold_2411_curated_11
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11135..11566)
DNA (432bp) protein (144aa)
GCN5-like N-acetyltransferaser n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM71_9BURK
GCN5-like N-acetyltransferaser {ECO:0000313|EMBL:EIK90311.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
putative N-acetyltransferase, GNAT family
scnpilot_p_inoc_scaffold_2411_curated_12
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11589..12239)
DNA (651bp) protein (217aa)
glutathione S-transferase-like protein; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase-like protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM70_9BURK
Glutathione S-transferase-like protein {ECO:0000313|EMBL:EIK90310.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
scnpilot_p_inoc_scaffold_2411_curated_13
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12253..12765)
DNA (513bp) protein (171aa)
HAD family hydrolase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM69_9BURK
HAD family hydrolase {ECO:0000313|EMBL:EIK90309.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
had-superfamily hydrolase, subfamily ia, variant 3; K07025 putative hydrolase of the HAD superfamily
Displaying 13 items

View Taxonomy