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scnpilot_p_inoc_scaffold_239_curated

Search features with annotation key words

Displaying items 1-30 of 192 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_239_curated_1
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

335..1270
DNA (936bp) protein (312aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4H4_9BRAD
Conjugal transfer protein TrbB {ECO:0000313|EMBL:KIC55727.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
trbB; P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
scnpilot_p_inoc_scaffold_239_curated_2
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1267..1599
DNA (333bp) protein (111aa)
Conjugal transfer protein TrbC n=2 Tax=Oligotropha carboxidovorans RepID=B6JA74_OLICO
Conjugal transfer protein TrbC {ECO:0000313|EMBL:KIC55728.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
trbC; putative conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
scnpilot_p_inoc_scaffold_239_curated_3
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1599..1880
DNA (282bp) protein (94aa)
conjugal transfer protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003144824
Conjugal transfer protein {ECO:0000313|EMBL:KIC55729.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
conjugal transfer protein TrbB; K03198 type IV secretion system protein VirB3
scnpilot_p_inoc_scaffold_239_curated_4
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1893..4346
DNA (2454bp) protein (818aa)
AAA ATPase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSC9_PARL1
Conjugal transfer protein TrbE {ECO:0000313|EMBL:KIC55730.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
scnpilot_p_inoc_scaffold_239_curated_5
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4349..5116
DNA (768bp) protein (256aa)
conjugal transfer protein TrbJ n=1 Tax=Paracoccus sp. TRP RepID=UPI000225FC56
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:KIC55731.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
conjugal transfer protein TrbJ
scnpilot_p_inoc_scaffold_239_curated_6
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5415..6770
DNA (1356bp) protein (452aa)
Conjugal transfer protein TrbL n=2 Tax=Oligotropha carboxidovorans RepID=B6JA69_OLICO
Conjugal transfer protein TrbL {ECO:0000313|EMBL:KIC55733.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
trbL; conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
scnpilot_p_inoc_scaffold_239_curated_7
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6767..7456
DNA (690bp) protein (230aa)
Conjugal transfer protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JA68_OLICO
Conjugal transfer protein TrbF {ECO:0000313|EMBL:KIC55734.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
trbF1; conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
scnpilot_p_inoc_scaffold_239_curated_8
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7453..8433
DNA (981bp) protein (327aa)
Conjugal transfer protein TrbG n=2 Tax=Oligotropha carboxidovorans RepID=B6JA67_OLICO
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KIC55735.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9
scnpilot_p_inoc_scaffold_239_curated_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8430..9602
DNA (1173bp) protein (391aa)
Conjugal transfer protein TrbI n=2 Tax=Oligotropha carboxidovorans RepID=B6JA66_OLICO
trbI1; conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
Conjugal transfer protein TrbI {ECO:0000313|EMBL:AEI05059.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_p_inoc_scaffold_239_curated_10
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9776..10765)
DNA (990bp) protein (330aa)
Transcriptional regulator, LysR family n=3 Tax=Oligotropha carboxidovorans RepID=B6JA65_OLICO
LysR family transcriptional regulator {ECO:0000313|EMBL:KIC58072.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_239_curated_11
Pectobacterium carotovorum, Pectobacterium, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10909..11469)
DNA (561bp) protein (187aa)
zinc-binding dehydrogenase n=1 Tax=Erwinia carotovora RepID=UPI0001A435D3
Zinc-binding dehydrogenase {ECO:0000313|EMBL:KHT30873.1}; TaxID=555 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.;" source="Pectobacterium carotovorum subsp. carotovorum (Erwinia carotovora; subsp. carotovora).;"
alcohol dehydrogenase
scnpilot_p_inoc_scaffold_239_curated_12
Rhizobium sp. NT-26, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11466..12755)
DNA (1290bp) protein (430aa)
Drug resistance transporter Bcr/CflA subfamily n=1 Tax=Rhizobium sp. RepID=L0NND8_RHISP
Drug resistance transporter Bcr/CflA subfamily {ECO:0000313|EMBL:CCF22391.1}; TaxID=1125847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. NT-26.;"
Bcr/CflA subfamily drug resistance transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein
scnpilot_p_inoc_scaffold_239_curated_13
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13760..14926)
DNA (1167bp) protein (389aa)
UPI0003CF48C9 related cluster n=2 Tax=unknown RepID=UPI0003CF48C9
transposase; K07486 transposase rbh
Transposase {ECO:0000313|EMBL:BAB52336.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
scnpilot_p_inoc_scaffold_239_curated_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15178..16374
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000365F58B
hypothetical protein; K02004 putative ABC transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
scnpilot_p_inoc_scaffold_239_curated_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16384..17646
DNA (1263bp) protein (421aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI0003627905
hypothetical protein; K02004 putative ABC transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
scnpilot_p_inoc_scaffold_239_curated_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17639..18364
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00036126B2
putative ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
scnpilot_p_inoc_scaffold_239_curated_17
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18420..18872
DNA (453bp) protein (151aa)
MerR family transcriptional regulator n=1 Tax=Oceanibaculum indicum P24 RepID=K2JBF3_9PROT
MerR family transcriptional regulator {ECO:0000313|EMBL:EKE67944.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
cueR; DNA-binding transcriptional activator of copper-responsive regulon genes
scnpilot_p_inoc_scaffold_239_curated_18
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18869..19087
DNA (219bp) protein (73aa)
MerR family transcriptional regulator n=1 Tax=Oceanibaculum indicum P24 RepID=K2JBF3_9PROT
MerR family transcriptional regulator {ECO:0000313|EMBL:EKE67944.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
cation translocating P-type ATPase
scnpilot_p_inoc_scaffold_239_curated_19
Pseudomonas xanthomarina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19886..22342
DNA (2457bp) protein (819aa)
Copper-transporting ATPase CopA {ECO:0000313|EMBL:CEG54771.1}; EC=3.6.3.4 {ECO:0000313|EMBL:CEG54771.1};; TaxID=271420 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas xanthomarina.;"
heavy metal-transporting ATPase (EC:3.6.3.-)
Heavy metal-transporting ATPase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J2L3_ACIMA
scnpilot_p_inoc_scaffold_239_curated_20
Deinococcus peraridilitoris, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

22355..22720
DNA (366bp) protein (122aa)
SnoaL-like polyketide cyclase n=1 Tax=Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200) RepID=L0A888_DEIPD
SnoaL-like polyketide cyclase
SnoaL-like polyketide cyclase {ECO:0000313|EMBL:AFZ69285.1}; TaxID=937777 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416; / KR-200).;"
scnpilot_p_inoc_scaffold_239_curated_21
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22832..24061
DNA (1230bp) protein (410aa)
Major facilitator superfamily MFS_1 n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JKB4_OLICO
MFS transporter
MFS transporter {ECO:0000313|EMBL:AEI08251.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_p_inoc_scaffold_239_curated_22
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24497..25186
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5ASF5_METEA
hypothetical protein; K06196 cytochrome c-type biogenesis protein
Uncharacterized protein {ECO:0000313|EMBL:ACS40396.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
scnpilot_p_inoc_scaffold_239_curated_23
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

25197..25430
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5ASF6_METEA
Uncharacterized protein {ECO:0000313|EMBL:AII54456.1}; TaxID=1356852 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
hypothetical protein
scnpilot_p_inoc_scaffold_239_curated_24
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25490..25579
DNA (90bp) protein (30aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Signal transduction histidine kinase n=1 Tax=Pseudomonas stutzeri DSM 10701 RepID=I6Z7X9_PSEST
Signal transduction histidine kinase
scnpilot_p_inoc_scaffold_239_curated_25
unknown

Not on your lists

comp(26749..28164)
DNA (1416bp) protein (472aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_239_curated_26
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28161..28847)
DNA (687bp) protein (229aa)
Winged helix family two component transcriptional regulator n=1 Tax=Pseudomonas stutzeri DSM 10701 RepID=I7A3W4_PSEST
Transcriptional regulator {ECO:0000313|EMBL:KJB91733.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
winged helix family two component transcriptional regulator
scnpilot_p_inoc_scaffold_239_curated_27
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28900..29775)
DNA (876bp) protein (292aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6ETU8_SPHCR
Uncharacterized protein {ECO:0000313|EMBL:KHL25852.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_239_curated_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30119..30856)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=SAR324 cluster bacterium SCGC AB-629-J17 RepID=UPI0003823EAF
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_scaffold_239_curated_29
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30850..32205)
DNA (1356bp) protein (452aa)
glycosyl transferase family 1 n=1 Tax=Sphingomonas wittichii RepID=UPI000303EF79
group 1 glycosyl transferase
Glycosyl transferase, group 1 {ECO:0000313|EMBL:ABQ70147.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_p_inoc_scaffold_239_curated_30
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32685..35870
DNA (3186bp) protein (1062aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S2Z2_9SPHN
hydrophobe/amphiphile efflux-1 (HAE1) family protein
Hydrophobe/amphiphile efflux-1 (HAE1) family protein {ECO:0000313|EMBL:AGH50400.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
Displaying items 1-30 of 192 in total

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