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scnpilot_p_inoc_scaffold_1434_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1434_curated_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..335)
DNA (333bp) protein (111aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G705_NOVAD
Nitrogen regulation protein ntrC {ECO:0000313|EMBL:GAO56088.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
two component sigma-54 specific Fis family transcriptional regulator; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG
scnpilot_p_inoc_scaffold_1434_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(348..1397)
DNA (1050bp) protein (350aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.3.-); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
Nitrogen regulation protein NtrB n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZZ9_9SPHN
scnpilot_p_inoc_scaffold_1434_curated_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1394..2422)
DNA (1029bp) protein (343aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
tRNA-dihydrouridine synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A879_9SPHN
TIM-barrel fold family protein
scnpilot_p_inoc_scaffold_1434_curated_4
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2500..3654
DNA (1155bp) protein (385aa)
ispDF; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:2.7.7.60 4.6.1.12); K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
Bifunctional enzyme IspD/IspF n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YQJ7_9SPHN
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_1434_curated_5
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3665..4228
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00031F608E
Uncharacterized protein {ECO:0000313|EMBL:KHS48969.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1434_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4231..4728
DNA (498bp) protein (166aa)
Nicotinamide-nucleotide amidohydrolase PncC {ECO:0000313|EMBL:AKH41617.1}; EC=3.5.1.42 {ECO:0000313|EMBL:AKH41617.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Competence protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J493_9SPHN
CinA-like protein; K03743
scnpilot_p_inoc_scaffold_1434_curated_7
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4689..5150)
DNA (462bp) protein (154aa)
cyclase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002E64881
Cyclase {ECO:0000313|EMBL:KEO99009.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
cyclase/dehydrase
scnpilot_p_inoc_scaffold_1434_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5150..6094)
DNA (945bp) protein (315aa)
Lipoyl synthase {ECO:0000313|EMBL:AKH41619.1}; EC=2.8.1.8 {ECO:0000313|EMBL:AKH41619.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8]
Lipoyl synthase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=LIPA_ERYLH rbh
scnpilot_p_inoc_scaffold_1434_curated_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6143..6796
DNA (654bp) protein (218aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
carbonate dehydratase (EC:4.2.1.1); K01673 carbonic anhydrase [EC:4.2.1.1]
Carbonic anhydrase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G713_NOVAD
scnpilot_p_inoc_scaffold_1434_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6845..7558
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NAD3_ERYLH
NYN domain protein {ECO:0000313|EMBL:AKH41621.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1434_curated_11
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7631..9088)
DNA (1458bp) protein (486aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EIY7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ58746.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1434_curated_12
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9399..12119
DNA (2721bp) protein (907aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YPU9_9SPHN
scnpilot_p_inoc_scaffold_1434_curated_13
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12127..12516)
DNA (390bp) protein (130aa)
glyoxalase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AB1A
Uncharacterized protein {ECO:0000313|EMBL:AHE53104.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
glyoxalase/bleomycin resistance protein/dioxygenase
scnpilot_p_inoc_scaffold_1434_curated_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12548..13228)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NAC9_ERYLH
YhhN-like protein {ECO:0000313|EMBL:AKH41537.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1434_curated_15
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13295..14644
DNA (1350bp) protein (450aa)
Methylenetetrahydrofolate--tRNA-(Uracil-5-)-methyltransferase TrmFO {ECO:0000313|EMBL:AKH41536.1}; EC=2.1.1.74 {ECO:0000313|EMBL:AKH41536.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
gid; tRNA (uracil-5-)-methyltransferase Gid; K04094 methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P7N0_9SPHN
scnpilot_p_inoc_scaffold_1434_curated_16
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14648..15109)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NAC7_ERYLH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC63364.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_p_inoc_scaffold_1434_curated_17
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15148..15804)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WC44_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EAQ30232.1}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. NAP1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1434_curated_18
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15862..17211)
DNA (1350bp) protein (450aa)
pyruvate dehydrogenase E1 component subunit beta (EC:1.2.4.1); K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YQI7_9SPHN
Pyruvate dehydrogenase E1 component subunit beta {ECO:0000313|EMBL:GAD50947.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_1434_curated_19
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17213..18325)
DNA (1113bp) protein (371aa)
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
pyruvate dehydrogenase (lipoamide) (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YBQ2_9SPHN
scnpilot_p_inoc_scaffold_1434_curated_20
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18499..18810)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YPU0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD50945.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
septum formation initiator
scnpilot_p_inoc_scaffold_1434_curated_21
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18880..19911)
DNA (1032bp) protein (344aa)
aldo/keto reductase n=1 Tax=Rhizobium leguminosarum RepID=UPI000372B283
aldo/keto reductase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
scnpilot_p_inoc_scaffold_1434_curated_22
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20112..20684
DNA (573bp) protein (191aa)
Uncharacterized protein {ECO:0000313|EMBL:AKH41526.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Displaying 22 items

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