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SCNpilot_BF_INOC_scaffold_2744

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_2744_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..97
DNA (96bp) protein (32aa)
tuf; elongation factor Tu (EC:3.6.5.3)
tuf; elongation factor Tu (EC:3.6.5.3); K02358 elongation factor Tu Tax=GWE1_Thiobacillus_62_9_curated
elongation factor Tu, partial n=2 Tax=Thiobacillus denitrificans RepID=UPI000376B2A7
SCNpilot_BF_INOC_scaffold_2744_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


107..415
DNA (309bp) protein (103aa)
rpsJ, nusE; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 id=12495324 bin=THIO_HI species=unknown genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rpsJ, nusE; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rpsJ; 30S ribosomal protein S10
SCNpilot_BF_INOC_scaffold_2744_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


541..1185
DNA (645bp) protein (215aa)
50S ribosomal protein L3P; K02906 large subunit ribosomal protein L3 id=12495323 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
50S ribosomal protein L3P
50S ribosomal protein L3 {ECO:0000255|HAMAP-Rule:MF_01325}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacil
SCNpilot_BF_INOC_scaffold_2744_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1185..1802
DNA (618bp) protein (206aa)
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 id=12495322 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rplD; 50S ribosomal protein L4
SCNpilot_BF_INOC_scaffold_2744_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1802..2107
DNA (306bp) protein (102aa)
50S ribosomal protein L23P; K02892 large subunit ribosomal protein L23 id=12495321 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
50S ribosomal protein L23P; K02892 large subunit ribosomal protein L23 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
50S ribosomal protein L23
SCNpilot_BF_INOC_scaffold_2744_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2959..3171
DNA (213bp) protein (71aa)
30S ribosomal protein S19 n=1 Tax=Thiobacillus denitrificans RepID=UPI0003734CF2
rpsS; 30S ribosomal protein S19
30S ribosomal protein S19 {ECO:0000255|HAMAP-Rule:MF_00531}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobaci
SCNpilot_BF_INOC_scaffold_2744_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3182..3511
DNA (330bp) protein (110aa)
50S ribosomal protein L22P; K02890 large subunit ribosomal protein L22 id=12495318 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
50S ribosomal protein L22
50S ribosomal protein L22 {ECO:0000255|HAMAP-Rule:MF_01331}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobaci
SCNpilot_BF_INOC_scaffold_2744_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3521..4225
DNA (705bp) protein (235aa)
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 id=12495317 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 {ECO:0000255|HAMAP-Rule:MF_01309}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacil
SCNpilot_BF_INOC_scaffold_2744_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4209..4625
DNA (417bp) protein (139aa)
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 id=12495316 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rplP; 50S ribosomal protein L16
SCNpilot_BF_INOC_scaffold_2744_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4629..4823
DNA (195bp) protein (65aa)
50S ribosomal protein L29P; K02904 large subunit ribosomal protein L29 id=12495315 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
50S ribosomal protein L29P; K02904 large subunit ribosomal protein L29 Tax=GWE1_Thiobacillus_62_9_curated
50S ribosomal protein L29
SCNpilot_BF_INOC_scaffold_2744_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4820..5083
DNA (264bp) protein (88aa)
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 id=12495314 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rpsQ; 30S ribosomal protein S17
SCNpilot_BF_INOC_scaffold_2744_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5268..5636
DNA (369bp) protein (123aa)
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 id=12495313 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=GWE1_Thiobacillus_62_9_curated
rplN; 50S ribosomal protein L14
SCNpilot_BF_INOC_scaffold_2744_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5646..5969
DNA (324bp) protein (108aa)
50S ribosomal protein L24P; K02895 large subunit ribosomal protein L24 id=12495312 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
50S ribosomal protein L24P; K02895 large subunit ribosomal protein L24 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
50S ribosomal protein L24
SCNpilot_BF_INOC_scaffold_2744_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5972..6511
DNA (540bp) protein (180aa)
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=12495311 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rplE; 50S ribosomal protein L5
SCNpilot_BF_INOC_scaffold_2744_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6769..7164
DNA (396bp) protein (132aa)
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 id=12495309 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
30S ribosomal protein S8
SCNpilot_BF_INOC_scaffold_2744_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7177..7707
DNA (531bp) protein (177aa)
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 id=12495308 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rplF; 50S ribosomal protein L6
SCNpilot_BF_INOC_scaffold_2744_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7724..8077
DNA (354bp) protein (118aa)
50S ribosomal protein L18P; K02881 large subunit ribosomal protein L18 id=12495307 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000255|HAMAP-Rule:MF_01337}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobaci
SCNpilot_BF_INOC_scaffold_2744_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8093..8608
DNA (516bp) protein (172aa)
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 id=12495306 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=GWE1_Thiobacillus_62_9_curated
rpsE; 30S ribosomal protein S5
SCNpilot_BF_INOC_scaffold_2744_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8612..8797
DNA (186bp) protein (62aa)
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 id=12495305 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rpmD; 50S ribosomal protein L30
SCNpilot_BF_INOC_scaffold_2744_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8798..9232
DNA (435bp) protein (145aa)
50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 id=12495304 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
50S ribosomal protein L15
SCNpilot_BF_INOC_scaffold_2744_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9251..10564
DNA (1314bp) protein (438aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=12495303 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
secY; preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophila
SCNpilot_BF_INOC_scaffold_2744_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10564..10782
DNA (219bp) protein (73aa)
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 id=12495302 bin=THIO_HI species=unknown genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
infA; translation initiation factor IF-1
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_BF_INOC_scaffold_2744_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10828..10941
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=2 Tax=Thiomonas RepID=D5X638_THIK1
rpmJ; 50S ribosomal protein L36; K02919 large subunit ribosomal protein L36 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rpmJ; 50S ribosomal protein L36
SCNpilot_BF_INOC_scaffold_2744_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11033..11389
DNA (357bp) protein (119aa)
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 id=12495301 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rpsM; 30S ribosomal protein S13
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_BF_INOC_scaffold_2744_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11399..11791
DNA (393bp) protein (131aa)
30S ribosomal protein S11 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RS11_THIDA
30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000255|HAMAP-Rule:MF_01310}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobaci
SCNpilot_BF_INOC_scaffold_2744_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11807..12436
DNA (630bp) protein (210aa)
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 id=12495299 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=GWE1_Thiobacillus_62_9_curated
rpsD; 30S ribosomal protein S4
SCNpilot_BF_INOC_scaffold_2744_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12466..13446
DNA (981bp) protein (327aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] id=12495298 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
SCNpilot_BF_INOC_scaffold_2744_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13550..13816
DNA (267bp) protein (89aa)
50S ribosomal protein L17P; K02879 large subunit ribosomal protein L17 id=12495297 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
50S ribosomal protein L17P; K02879 large subunit ribosomal protein L17 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
50S ribosomal protein L17
Displaying 28 items

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