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SCNpilot_bf_inoc_scaffold_404_curated

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_404_curated_1
Bacteroides sp. CAG:443, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(246..1019)
DNA (774bp) protein (258aa)
Phospholipase/carboxylesterase n=1 Tax=Bacteroides sp. CAG:443 RepID=R6MW22_9BACE
Phospholipase/carboxylesterase {ECO:0000313|EMBL:CDC00044.1}; TaxID=1262739 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:443.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_404_curated_2
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1258..4020
DNA (2763bp) protein (921aa)
2-oxoglutarate dehydrogenase, E1 subunit (EC:1.2.4.2); K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000361FAFF
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_404_curated_3
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4027..5274
DNA (1248bp) protein (416aa)
dihydrolipoamide acetyltransferase; K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003821405
2-oxoglutarate dehydrogenase, E2 subunit,dihydrolipoamide succinyltransferase {ECO:0000313|EMBL:CEA17140.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
SCNpilot_bf_inoc_scaffold_404_curated_4
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5320..6612)
DNA (1293bp) protein (431aa)
Outer membrane protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0Z7_PALPW
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:ADQ78378.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_404_curated_5
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6630..8654)
DNA (2025bp) protein (675aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
transketolase (EC:2.2.1.1 2.2.1.3); K00615 transketolase [EC:2.2.1.1]
Transketolase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0Z5_PALPW
SCNpilot_bf_inoc_scaffold_404_curated_6
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8660..9403)
DNA (744bp) protein (248aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0Z4_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ78375.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_404_curated_7
RBG_19FT_COMBO_Bacteroidetes_42_10_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(9375..9827)
DNA (453bp) protein (151aa)
Tax=RBG_19FT_COMBO_Bacteroidetes_42_10_curated
SCNpilot_bf_inoc_scaffold_404_curated_8
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(9833..10351)
DNA (519bp) protein (173aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0Z2_PALPW
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_404_curated_9
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10379..11329)
DNA (951bp) protein (317aa)
Glycosyl transferase family 2 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0Y9_PALPW
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADQ78370.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_404_curated_10
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(11340..11894)
DNA (555bp) protein (185aa)
Uncharacterized protein n=2 Tax=Bacteroides finegoldii RepID=K5CU02_9BACE
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_404_curated_11
unknown

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11947..12132
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_404_curated_12
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12383..12625
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036F89AC
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_bf_inoc_scaffold_404_curated_13
Flavobacterium saliperosum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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12622..13032
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036E04DD
Pilt protein domain-containing protein {ECO:0000313|EMBL:ESU25215.1}; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium saliperosum S13.;"
twitching motility protein PilT
SCNpilot_bf_inoc_scaffold_404_curated_14
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13097..14521)
DNA (1425bp) protein (475aa)
phospholipase d/transphosphatidylase; K06131 cardiolipin synthase [EC:2.7.8.-]
Phospholipase D/Transphosphatidylase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T469_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_404_curated_15
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14514..15575)
DNA (1062bp) protein (354aa)
diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-aminO-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Riboflavin biosynthesis protein RibD n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T470_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_404_curated_16
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15595..16431
DNA (837bp) protein (279aa)
proteiN-(glutamine-n5) methyltransferase, release factor-specific; K02493 release factor glutamine methyltransferase [EC:2.1.1.-]
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" sourc
Release factor glutamine methyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T471_PALPW
SCNpilot_bf_inoc_scaffold_404_curated_17
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16501..17052
DNA (552bp) protein (184aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4B1_PALPW
RNA polymerase, sigma-24 subunit, ecf subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADQ79555.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_404_curated_18
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17145..17477
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4B0_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79554.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_404_curated_19
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17497..17970
DNA (474bp) protein (158aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4A9_PALPW
Uncharacterized protein {ECO:0000313|EMBL:ADQ79553.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_404_curated_20
Paraprevotella xylaniphila, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18252..18620)
DNA (369bp) protein (123aa)
DNA-binding helix-turn-helix protein n=1 Tax=Paraprevotella xylaniphila YIT 11841 RepID=F3QW72_9BACT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EGG52260.1}; TaxID=762982 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella xylaniphila YIT 11841.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_404_curated_21
Bacteroides sp. CAG:702, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18631..18927)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:702 RepID=R5U1G9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ69439.1}; TaxID=1262747 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:702.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_404_curated_22
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19173..20339
DNA (1167bp) protein (389aa)
phosphoribosylformylglycinamidine cyclO-ligase (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000313|EMBL:ADQ79432.1}; EC=6.3.3.1 {ECO:0000313|EMBL:ADQ79432.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3Y8_PALPW
SCNpilot_bf_inoc_scaffold_404_curated_23
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20357..21136)
DNA (780bp) protein (260aa)
Methyltransferase type 12 n=1 Tax=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) RepID=B8FP94_DESHD
type 12 methyltransferase
Methyltransferase type 12 {ECO:0000313|EMBL:ACL19619.1}; TaxID=272564 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (strain DCB-2 / DSM 10664).;"
SCNpilot_bf_inoc_scaffold_404_curated_24
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21193..21768)
DNA (576bp) protein (192aa)
Multiple antibiotic resistance (MarC)-related protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3Y9_PALPW
multiple antibiotic resistance (marc)-related protein; K05595 multiple antibiotic resistance protein
UPF0056 inner membrane protein {ECO:0000256|RuleBase:RU362048}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_404_curated_25
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21900..22694)
DNA (795bp) protein (265aa)
Glycosyl transferase family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3Z0_PALPW
glycosyl transferase family protein; K07011
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_404_curated_26
Bacteroides thetaiotaomicron, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(22757..24070)
DNA (1314bp) protein (438aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=R9GZU4_BACT4
hypothetical protein rbh
Putative membrane protein {ECO:0000313|EMBL:AAO78661.1}; TaxID=226186 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC; 10582 / E50 / VPI-5482).;"
SCNpilot_bf_inoc_scaffold_404_curated_27
unknown

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24071..24211
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_404_curated_28
unknown

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24373..24816
DNA (444bp) protein (148aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_404_curated_29
unknown

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24824..25492
DNA (669bp) protein (223aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_404_curated_30
unknown

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25817..26212
DNA (396bp) protein (132aa)

This feature has no annotations

Displaying items 1-30 of 56 in total

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