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SCNpilot_bf_inoc_scaffold_42_curated

Search features with annotation key words

Displaying items 1-30 of 180 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_42_curated_1
unknown

Not on your lists

comp(3..140)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_42_curated_2
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(380..1096)
DNA (717bp) protein (239aa)
2OG-Fe(II) oxygenase n=1 Tax=Rudaea cellulosilytica RepID=UPI00036294F9
Uncharacterized protein {ECO:0000313|EMBL:KFN43790.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_42_curated_3
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1178..2284)
DNA (1107bp) protein (369aa)
Putative uncharacterized protein n=1 Tax=Comamonas testosteroni S44 RepID=D8D9S3_COMTE
Uncharacterized protein {ECO:0000313|EMBL:KFN42812.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_42_curated_4
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2422..3480)
DNA (1059bp) protein (353aa)
DNA-binding protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B4F000
Uncharacterized protein {ECO:0000313|EMBL:KFN42813.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
DNA-binding domain-containing protein
SCNpilot_bf_inoc_scaffold_42_curated_5
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3569..4597)
DNA (1029bp) protein (343aa)
fructose-1,6-bisphosphatase (EC:3.1.3.11)
fructose-1 6-bisphosphatase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B45710
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_bf_inoc_scaffold_42_curated_6
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4812..7610
DNA (2799bp) protein (933aa)
Psychrophilic metalloprotease Fpp1 n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XRB5_FLAIG
Metalloprotease {ECO:0000313|EMBL:BAQ56327.1}; TaxID=96345 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum.;"
fpp1; Psychrophilic metalloprotease Fpp1 precursor
SCNpilot_bf_inoc_scaffold_42_curated_7
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7853..8227
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003652173
Uncharacterized protein {ECO:0000313|EMBL:KJV10309.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
hypothetical protein; K06996
SCNpilot_bf_inoc_scaffold_42_curated_8
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8434..9123
DNA (690bp) protein (230aa)
DeoR faimly transcriptional regulator n=1 Tax=Dyella ginsengisoli RepID=UPI00034AB99D
DeoR faimly transcriptional regulator {ECO:0000313|EMBL:GAN45844.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
putative transcriptional regulator
SCNpilot_bf_inoc_scaffold_42_curated_9
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9502..10731)
DNA (1230bp) protein (410aa)
rlmI; 50S m5C1962 methyltransferase RlmI; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003811F3D
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_bf_inoc_scaffold_42_curated_10
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10741..11442
DNA (702bp) protein (234aa)
Sugar fermentation stimulation protein homolog n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QNC2_AZOSU
sugar fermentation stimulation protein; K06206 sugar fermentation stimulation protein A
Sugar fermentation stimulation protein homolog {ECO:0000256|HAMAP-Rule:MF_00095}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_bf_inoc_scaffold_42_curated_11
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11570..12562)
DNA (993bp) protein (331aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
delta-aminolevulinic acid dehydratase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B7484E
delta-aminolevulinic acid dehydratase
SCNpilot_bf_inoc_scaffold_42_curated_12
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12850..15408
DNA (2559bp) protein (853aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003778128
signal transduction protein containing a membrane domain an EAL and a GGDEF domain
Tax=RBG_16_Gamma2_60_9_curated
SCNpilot_bf_inoc_scaffold_42_curated_13
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15401..16285
DNA (885bp) protein (295aa)
peptide ABC transporter permease n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B61F46
binding-protein-dependent transport systems inner membrane component; K15582 oligopeptide transport system permease protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_bf_inoc_scaffold_42_curated_14
Halomonas huangheensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16282..17895
DNA (1614bp) protein (538aa)
peptide ABC transporter ATPase n=1 Tax=Halomonas smyrnensis RepID=UPI0002FA1ABE
Uncharacterized protein {ECO:0000313|EMBL:ERL49716.1}; TaxID=1178482 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas huangheensis.;"
ABC transporter-like protein; K13896 microcin C transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_42_curated_15
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18048..18515
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037EAA6D
Uncharacterized protein {ECO:0000313|EMBL:GAN45554.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
membrane protease subunit, stomatin/prohibitin
SCNpilot_bf_inoc_scaffold_42_curated_16
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18642..19271
DNA (630bp) protein (210aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.-)
16S rRNA methyltransferase n=1 Tax=Dyella japonica RepID=UPI0002EC63D1
SCNpilot_bf_inoc_scaffold_42_curated_17

Not on your lists

19288..20079
DNA (792bp) protein (264aa)
Sporulation initiation inhibitor protein Soj n=1 Tax=mine drainage metagenome RepID=T1C4M5_9ZZZZ
Sporulation initiation inhibitor protein Soj {ECO:0000313|EMBL:EQD75798.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ATPase involved in chromosome partitioning
SCNpilot_bf_inoc_scaffold_42_curated_18
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20088..20963
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000372ECF4
Chromosome partitioning protein ParB {ECO:0000313|EMBL:GAN45557.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ParB-like partition protein; K03497 chromosome partitioning protein, ParB family
SCNpilot_bf_inoc_scaffold_42_curated_19
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21015..21527
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D4936
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_bf_inoc_scaffold_42_curated_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21524..22246
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUG8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90859.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_bf_inoc_scaffold_42_curated_21
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22461..23180
DNA (720bp) protein (240aa)
Dolichol-phosphate mannosyltransferase {ECO:0000313|EMBL:CCP13812.1}; EC=2.4.1.83 {ECO:0000313|EMBL:CCP13812.1};; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
family 2 glycosyl transferase; K00721 dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
dolichol-phosphate mannosyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F87472
SCNpilot_bf_inoc_scaffold_42_curated_22
unknown

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23495..24805
DNA (1311bp) protein (437aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_42_curated_23
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24909..26609
DNA (1701bp) protein (567aa)
ggt3; gamma-glutamyltranspeptidase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Exported gamma-glutamyltranspeptidase {ECO:0000313|EMBL:CAP50218.1}; EC=2.3.2.2 {ECO:0000313|EMBL:CAP50218.1};; TaxID=509169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris (strain B100).;"
Exported gamma-glutamyltranspeptidase n=2 Tax=Xanthomonas campestris RepID=B0RP33_XANCB
SCNpilot_bf_inoc_scaffold_42_curated_24
unknown

Not on your lists

26732..27859
DNA (1128bp) protein (376aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_42_curated_25
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28005..28640
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035FA93F
Uncharacterized protein {ECO:0000313|EMBL:KFN44227.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
partition protein; K03496 chromosome partitioning protein
SCNpilot_bf_inoc_scaffold_42_curated_26
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28890..29360
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003616D3E
Phosphoglycerate mutase {ECO:0000313|EMBL:AKC86633.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
putative phosphoglycerate mutase family protein
SCNpilot_bf_inoc_scaffold_42_curated_27
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29375..29947
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000378E05C
Uncharacterized protein {ECO:0000313|EMBL:EIL86785.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_42_curated_28
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29962..31785
DNA (1824bp) protein (608aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036EDBE7
Phospholipase {ECO:0000313|EMBL:GAN45143.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase
SCNpilot_bf_inoc_scaffold_42_curated_29
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32138..32716
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000368A5EC
Uncharacterized protein {ECO:0000313|EMBL:GAN45144.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_42_curated_30
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33064..34218)
DNA (1155bp) protein (385aa)
transporter n=1 Tax=Xanthomonas sacchari RepID=UPI000262A197
RDD domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
Displaying items 1-30 of 180 in total

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