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SCNpilot_bf_inoc_scaffold_42_curated

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Displaying items 61-90 of 180 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_42_curated_61
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(81092..84439)
DNA (3348bp) protein (1116aa)
DNA/RNA helicase, superfamily II, SNF2 family n=1 Tax=Rhodanobacter denitrificans RepID=M4NMB9_9GAMM
DNA/RNA helicase, superfamily II, SNF2 family
DNA/RNA helicase, superfamily II, SNF2 family {ECO:0000313|EMBL:AGG90798.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_42_curated_62
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84573..88112)
DNA (3540bp) protein (1180aa)
ferredoxin oxidoreductase oxidoreductase; K04090 indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035E8981
Uncharacterized protein {ECO:0000313|EMBL:KFN44238.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
SCNpilot_bf_inoc_scaffold_42_curated_63
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(88459..89388)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C268_NITHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE16656.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
SCNpilot_bf_inoc_scaffold_42_curated_64
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89474..90643
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VPP5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KJV28430.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_42_curated_65
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(90955..92712)
DNA (1758bp) protein (586aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3D7_NITHN
hypothetical protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_bf_inoc_scaffold_42_curated_66
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93086..96043)
DNA (2958bp) protein (986aa)
TonB-dependent receptor n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3D8_NITHN
TonB-dependent receptor
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_bf_inoc_scaffold_42_curated_67
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


96561..98312
DNA (1752bp) protein (584aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
arginyl-tRNA synthetase (EC:6.1.1.19)
arginyl-tRNA synthetase n=1 Tax=Rudaea cellulosilytica RepID=UPI00035CCA2F
SCNpilot_bf_inoc_scaffold_42_curated_68
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

98329..98970
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037D0697
Sporulation protein {ECO:0000313|EMBL:GAN45181.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
cell division protein
SCNpilot_bf_inoc_scaffold_42_curated_69
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

99429..104762
DNA (5334bp) protein (1778aa)
Rhs family protein n=1 Tax=Xanthomonas citri subsp. citri Aw12879 RepID=M4VZ86_XANCI
RhsD protein {ECO:0000313|EMBL:CEL33198.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
rhsA; Rhs family protein
SCNpilot_bf_inoc_scaffold_42_curated_70
unknown

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105471..106952
DNA (1482bp) protein (494aa)
PREDICTED: mucin-2-like n=1 Tax=Geospiza fortis RepID=UPI0003958A44
SCNpilot_bf_inoc_scaffold_42_curated_71
Kangiella geojedonensis, Kangiella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(107069..108562)
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125) RepID=C7RCF6_KANKD
Uncharacterized protein {ECO:0000313|EMBL:AKE51881.1}; TaxID=914150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Kangiella.;" source="Kangiella geojedonensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_42_curated_72
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108705..110135)
DNA (1431bp) protein (477aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00031828CC
Recombinase RmuC {ECO:0000313|EMBL:AIF45851.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
rmuC family protein
SCNpilot_bf_inoc_scaffold_42_curated_73
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(110445..112586)
DNA (2142bp) protein (714aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
glycyl-tRNA synthetase beta chain (EC:6.1.1.14)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037FC73C
SCNpilot_bf_inoc_scaffold_42_curated_74
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(112579..113496)
DNA (918bp) protein (306aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
glycyl-tRNA synthetase alpha chain (EC:6.1.1.14)
glycyl-tRNA synthetase n=1 Tax=Rudaea cellulosilytica RepID=UPI000362ADF1
SCNpilot_bf_inoc_scaffold_42_curated_75
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

113571..115406
DNA (1836bp) protein (612aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035DFDB2
Type II secretion system protein E {ECO:0000313|EMBL:AHX15407.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
SCNpilot_bf_inoc_scaffold_42_curated_76
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115410..116135
DNA (726bp) protein (242aa)
glutamine amidotransferase class-I; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
Glutamine amidotransferase class-I n=1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0A854_ALKEH
Glutamine amidotransferase {ECO:0000313|EMBL:GAN45747.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SCNpilot_bf_inoc_scaffold_42_curated_77
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(116460..116678)
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037AA0C1
Uncharacterized protein {ECO:0000313|EMBL:GAN45748.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SCNpilot_bf_inoc_scaffold_42_curated_78
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(116876..117637)
DNA (762bp) protein (254aa)
Sec-independent protein translocase protein TatC n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WX84_PSEUU
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Sec-independent protein translocase, TatC subunit; K03118 sec-independent protein translocase protein TatC
SCNpilot_bf_inoc_scaffold_42_curated_79
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(117624..117941)
DNA (318bp) protein (106aa)
Sec-independent protein translocase protein TatB n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5K9R2_STEMA
Sec-independent protein translocase protein TatB {ECO:0000256|HAMAP-Rule:MF_00237, ECO:0000256|SAAS:SAAS00028234}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
tatB; putative Sec-independent protein translocase TatB; K03117 sec-independent protein translocase protein TatB
SCNpilot_bf_inoc_scaffold_42_curated_80
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(117951..118172)
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI0003809707
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
tatA; twin arginine translocase protein A; K03116 sec-independent protein translocase protein TatA
SCNpilot_bf_inoc_scaffold_42_curated_81
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(118264..118941)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTR3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90604.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_42_curated_82
unknown

Not on your lists

comp(119062..120012)
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036A1A6D
SCNpilot_bf_inoc_scaffold_42_curated_83
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

120169..121218
DNA (1050bp) protein (350aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ferrochelatase (EC:4.99.1.1)
Ferrochelatase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ21_9GAMM
SCNpilot_bf_inoc_scaffold_42_curated_84
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121215..122072
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000361737E
Lipase LipA (L.pneumophila) {ECO:0000313|EMBL:EIL90606.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative hydrolase or acyltransferase of alpha/beta superfamily
SCNpilot_bf_inoc_scaffold_42_curated_85
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122212..122970)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037E8826
Metal-dependent hydrolase {ECO:0000313|EMBL:GAN45092.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
putative metal-dependent hydrolase
SCNpilot_bf_inoc_scaffold_42_curated_86
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(123089..124003)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000364BDBF
Recombination-associated protein RdgC {ECO:0000256|HAMAP-Rule:MF_00194, ECO:0000256|SAAS:SAAS00073315}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
DNA recombination-dependent growth factor C
SCNpilot_bf_inoc_scaffold_42_curated_87
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(124073..124948)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003709E63
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000256|HAMAP-Rule:MF_01850}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
tRNA(Cytosine32)-2-thiocytidine synthetase; K14058 tRNA 2-thiocytidine biosynthesis protein TtcA
SCNpilot_bf_inoc_scaffold_42_curated_88
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

125074..125280
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B60C1E
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_bf_inoc_scaffold_42_curated_89
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(125268..126593)
DNA (1326bp) protein (442aa)
Na+ antiporter NhaC n=1 Tax=Marinomonas sp. (strain MWYL1) RepID=A6VTZ5_MARMS
Sodium:proton antiporter {ECO:0000313|EMBL:KGM55465.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
Na+ antiporter NhaC
SCNpilot_bf_inoc_scaffold_42_curated_90
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(126792..127796)
DNA (1005bp) protein (335aa)
Putative limonene hydroxylase CD6-2 n=1 Tax=Enterobacter cloacae S611 RepID=V5AP20_ENTCL
Putative limonene hydroxylase CD6-2 {ECO:0000313|EMBL:ESS56974.1}; TaxID=1399146 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae S611.;"
Displaying items 61-90 of 180 in total

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