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RTP_03222018_0_2um_scaffold_560

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_560_1
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(123..1811)
DNA (1689bp) protein (563aa)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ACJ7_9PROT
single-stranded-DNA-specific exonuclease RecJ
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:BAN35633.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_03222018_0_2um_scaffold_560_2
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1808..2179)
DNA (372bp) protein (124aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GEF5_GEOUR
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_2um_scaffold_560_3
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2218..2835
DNA (618bp) protein (206aa)
Alpha-ribazole phosphatase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B5P0_9PROT
alpha-ribazole phosphatase
Alpha-ribazole phosphatase {ECO:0000313|EMBL:BAN35857.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_03222018_0_2um_scaffold_560_4
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2879..4210
DNA (1332bp) protein (444aa)
Diguanylate phosphodiesterase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAN7_9PROT
Diguanylate phosphodiesterase
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_2um_scaffold_560_5
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4097..5131)
DNA (1035bp) protein (345aa)
Uncharacterized conserved protein UCP015557 id=1892918 bin=GWE2_Gallionellales_58_10 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
hypothetical protein
Uncharacterized conserved protein UCP015557 {ECO:0000313|EMBL:ADE12304.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
RTP_03222018_0_2um_scaffold_560_6

Not on your lists


comp(5136..7880)
DNA (2745bp) protein (915aa)
Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS) {ECO:0000313|EMBL:CBI09305.1}; EC=6.1.1.9 {ECO:0000313|EMBL:CBI09305.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
valS; Valyl-tRNA synthetase (EC:6.1.1.9)
Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS) n=1 Tax=mine drainage metagenome RepID=E6QPY4_9ZZZZ
RTP_03222018_0_2um_scaffold_560_7
unknown

Not on your lists

comp(7913..8386)
DNA (474bp) protein (158aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_560_8

Not on your lists

comp(8388..8807)
DNA (420bp) protein (140aa)
Putative DNA polymerase III chi subunit n=1 Tax=mine drainage metagenome RepID=E6QPY2_9ZZZZ
Putative DNA polymerase III chi subunit {ECO:0000313|EMBL:CBI09303.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DNA polymerase III subunit chi
RTP_03222018_0_2um_scaffold_560_9

Not on your lists

comp(8804..10294)
DNA (1491bp) protein (497aa)
Cytosol aminopeptidase (Leucine aminopeptidase) (LAP) (Leucyl aminopeptidase) {ECO:0000313|EMBL:CBI09302.1}; EC=3.4.11.1 {ECO:0000313|EMBL:CBI09302.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Cytosol aminopeptidase (Leucine aminopeptidase) (LAP) (Leucyl aminopeptidase) n=1 Tax=mine drainage metagenome RepID=E6QPY1_9ZZZZ
leucyl aminopeptidase
RTP_03222018_0_2um_scaffold_560_10

Not on your lists

10361..11440
DNA (1080bp) protein (360aa)
Putative permease n=1 Tax=mine drainage metagenome RepID=E6QPY0_9ZZZZ
Putative permease {ECO:0000313|EMBL:CBI09301.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
YjgP/YjgQ family permease
RTP_03222018_0_2um_scaffold_560_11

Not on your lists

11437..12513
DNA (1077bp) protein (359aa)
Putative permease n=1 Tax=mine drainage metagenome RepID=E6QPX9_9ZZZZ
Putative permease {ECO:0000313|EMBL:CBI09300.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
permease YjgP/YjgQ
RTP_03222018_0_2um_scaffold_560_12

Not on your lists

comp(12491..12904)
DNA (414bp) protein (138aa)
RDD n=1 Tax=mine drainage metagenome RepID=E6QPX8_9ZZZZ
RDD {ECO:0000313|EMBL:CBI09299.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RDD protein
RTP_03222018_0_2um_scaffold_560_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13245..14276
DNA (1032bp) protein (344aa)
tRNA-dihydrouridine synthase n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DLU4_METS0
TIM-barrel protein, nifR3 family
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_560_14

Not on your lists

14290..14529
DNA (240bp) protein (80aa)
Putative DNA-binding protein fis n=1 Tax=mine drainage metagenome RepID=E6QPX6_9ZZZZ
Putative DNA-binding protein fis {ECO:0000313|EMBL:CBI09297.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Fis family transcriptional regulator
RTP_03222018_0_2um_scaffold_560_15

Not on your lists

14582..16147
DNA (1566bp) protein (522aa)
Bifunctional purine biosynthesis protein purH {ECO:0000313|EMBL:CBI09296.1}; EC=2.1.2.3 {ECO:0000313|EMBL:CBI09296.1};; EC=3.5.4.10 {ECO:0000313|EMBL:CBI09296.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:3.5.4.10)
Bifunctional purine biosynthesis protein purH n=1 Tax=mine drainage metagenome RepID=E6QPX5_9ZZZZ
RTP_03222018_0_2um_scaffold_560_16

Not on your lists

16156..17430
DNA (1275bp) protein (425aa)
Phosphoribosylglycinamide synthetase (GAR synthetase) (Phosphoribosylamine--glycine ligase) (Glycinamide ribonucleotide synthetase) {ECO:0000313|EMBL:CBI09294.1}; EC=6.3.4.13 {ECO:0000313|EMBL:CBI09294.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
phosphoribosylamine/glycine ligase (EC:6.3.4.13)
Phosphoribosylglycinamide synthetase (GAR synthetase) (Phosphoribosylamine--glycine ligase) (Glycinamide ribonucleotide synthetase) n=1 Tax=mine drainage metagenome RepID=E6QPX3_9ZZZZ
RTP_03222018_0_2um_scaffold_560_17

Not on your lists

17441..17950
DNA (510bp) protein (170aa)
Putative ribosome maturation factor n=1 Tax=mine drainage metagenome RepID=E6QPX2_9ZZZZ
Putative ribosome maturation factor {ECO:0000313|EMBL:CBI09293.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
SUA5/yciO/yrdC domain-containing protein
RTP_03222018_0_2um_scaffold_560_18
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17963..18868
DNA (906bp) protein (302aa)
coproporphyrinogen III oxidase (EC:1.3.3.3)
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6X906_METSD
RTP_03222018_0_2um_scaffold_560_19
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18872..22135
DNA (3264bp) protein (1088aa)
transmembrane protein id=12496435 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
transmembrane protein
Tax=CG_Hydro_01
RTP_03222018_0_2um_scaffold_560_20

Not on your lists

22139..23389
DNA (1251bp) protein (417aa)
Glutamyl-tRNA reductase (GluTR) {ECO:0000313|EMBL:CBI09291.1}; EC=1.2.1.70 {ECO:0000313|EMBL:CBI09291.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Glutamyl-tRNA reductase (GluTR) n=1 Tax=mine drainage metagenome RepID=E6QPX0_9ZZZZ
hemA; glutamyl-tRNA reductase
RTP_03222018_0_2um_scaffold_560_21
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23386..24462
DNA (1077bp) protein (359aa)
Peptide chain release factor 1 n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FXZ5_9BURK
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
prfA; peptide chain release factor 1
RTP_03222018_0_2um_scaffold_560_22

Not on your lists

24468..25277
DNA (810bp) protein (270aa)
N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 {ECO:0000313|EMBL:CBI09289.1}; EC=2.1.1.- {ECO:0000313|EMBL:CBI09289.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 n=1 Tax=mine drainage metagenome RepID=E6QPW8_9ZZZZ
prmC; Release factor glutamine methyltransferase
RTP_03222018_0_2um_scaffold_560_23
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25304..25993)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9X9_9PROT
Membrane protein {ECO:0000313|EMBL:GAO36029.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_560_24

Not on your lists

26134..26946
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QWY7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI11761.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
signal transduction protein
RTP_03222018_0_2um_scaffold_560_25
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26943..28286)
DNA (1344bp) protein (448aa)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJY5_9PROT
rumA; 23S rRNA 5-methyluridine methyltransferase
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_2um_scaffold_560_26
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28517..29173)
DNA (657bp) protein (219aa)
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
adenylate kinase n=1 Tax=Thiobacillus thioparus RepID=UPI0003760FF0
RTP_03222018_0_2um_scaffold_560_27
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29180..29941)
DNA (762bp) protein (254aa)
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=KDSB_METFK
Tax=BJP_S1_SUB10_Methylophilales_55_32
RTP_03222018_0_2um_scaffold_560_28
BJP_IG2158_Methylococcales_50_91, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29941..30120)
DNA (180bp) protein (60aa)
UPF0434 protein n=1 Tax=uncultured bacterium 9F08 RepID=D2XIQ7_9BACT
conserved hypothetical protein
Tax=BJP_IG2158_Methylococcales_50_91
RTP_03222018_0_2um_scaffold_560_29
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30113..31117)
DNA (1005bp) protein (335aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
Tetraacyldisaccharide 4'-kinase n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QJS2_METS6
lpxK; tetraacyldisaccharide 4'-kinase
RTP_03222018_0_2um_scaffold_560_30
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31111..32202)
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036441BA
Uncharacterized protein {ECO:0000313|EMBL:KFZ91358.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
hypothetical protein
Displaying items 1-30 of 48 in total

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