ggKbase home page
Advanced Search
Search Help

SW_11_Halobacteriales_67_37

In projects: SW_11  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: SW_11_UNK

Properties

Avg. coverage: 36.74 Longest contig: 28.54 Kbp Bin length: 868.18 Kbp GC content: 67.28 %
Contigs count: 104 Features count: 988 rRNAs count: 0 tRNAs count: 5

Genome completeness

partial RP 16 / 55 MC: 3 BSCG 10 / 51 ASCG 11 / 38
Displaying items 1-50 of 104 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_11_scaffold_2714
Class: Halobacteria (71.43%)
14 9504 bp 64.85 36.01 69.51
sw_11_scaffold_7091
Species: Halosimplex carlsbadense (50%)
4 3107 bp 71.03 38.88 71.26
sw_11_scaffold_2859
Order: Halobacteriales (71.43%)
7 4927 bp 66.77 34.50 71.79
sw_11_scaffold_3281
Order: Halobacteriales (60%)
5 3053 bp 64.69 32.79 71.83
sw_11_scaffold_3979
Order: Halobacteriales (71.43%)
14 12084 bp 65.09 30.97 72.67
sw_11_scaffold_3227
Class: Halobacteria (66.67%)
6 5393 bp 70.39 40.66 75.54
sw_11_scaffold_3046
Order: Halobacteriales (71.43%)
7 5150 bp 66.00 38.21 76.89
sw_11_scaffold_1783
Order: Haloferacales (50%)
12 8757 bp 66.12 34.95 78.11
sw_11_scaffold_558
Order: Halobacteriales (85.71%)
7 8813 bp 67.57 41.64 78.74
sw_11_scaffold_1123
Class: Halobacteria (75%)
12 8610 bp 67.11 34.16 79.79
sw_11_scaffold_7435
Genus: Haloarcula (50%)
4 3949 bp 66.42 32.11 80.15
sw_11_scaffold_3518
Genus: Haloarcula (60%)
5 4134 bp 69.93 34.37 81.28
sw_11_scaffold_6882
Order: Halobacteriales (66.67%)
6 3177 bp 65.09 38.94 81.49
sw_11_scaffold_1445
Order: Halobacteriales (100%)
5 5094 bp 69.30 42.46 82.10
sw_11_scaffold_2808
Order: Halobacteriales (100%)
6 3962 bp 64.71 39.65 82.23
sw_11_scaffold_685
Order: Halobacteriales (52.94%)
17 14743 bp 65.90 37.27 82.70
sw_11_scaffold_3637
Order: Halobacteriales (69.23%)
13 7502 bp 65.01 34.98 82.86
sw_11_scaffold_381
Order: Halobacteriales (70%)
10 10858 bp 69.61 40.97 83.52
sw_11_scaffold_289
Order: Halobacteriales (62.5%)
24 20692 bp 65.14 36.78 83.64
sw_11_scaffold_2429
Class: Halobacteria (62.5%)
8 7256 bp 67.46 31.31 83.97
sw_11_scaffold_2573
Genus: Haloarcula (50%)
8 5486 bp 66.79 34.51 84.32
sw_11_scaffold_606
Order: Halobacteriales (75%)
8 7717 bp 67.12 35.25 84.51
sw_11_scaffold_2463
Order: Halobacteriales (100%)
3 3683 bp 69.51 35.65 84.63
sw_11_scaffold_375
Order: Halobacteriales (84.21%)
19 17565 bp 69.18 39.34 85.38
sw_11_scaffold_6332
Species: Halomicrobium mukohataei (50%)
4 3067 bp 67.53 32.87 86.66
sw_11_scaffold_2158
Class: Halobacteria (50%)
8 4011 bp 66.52 34.36 86.76
sw_11_scaffold_387
Class: Halobacteria (75%)
20 19567 bp 66.62 35.35 86.92
sw_11_scaffold_461
Order: Halobacteriales (84.62%)
13 10040 bp 69.06 38.36 87.07
sw_11_scaffold_231
Class: Halobacteria (76.92%)
13 16374 bp 66.79 42.27 87.28
sw_11_scaffold_1494
Order: Halobacteriales (77.78%)
9 7635 bp 65.27 33.03 87.47
sw_11_scaffold_1239
Order: Halobacteriales (78.57%)
14 8887 bp 67.11 40.13 87.61
sw_11_scaffold_280
Order: Halobacteriales (58.33%)
12 11128 bp 69.12 39.74 87.67
sw_11_scaffold_6555
Order: Halobacteriales (66.67%)
3 3638 bp 70.75 39.75 87.99
sw_11_scaffold_1433
Order: Halobacteriales (86.67%)
15 11226 bp 67.17 43.98 88.08
sw_11_scaffold_860
Order: Halobacteriales (71.43%)
7 7139 bp 66.30 31.62 88.16
sw_11_scaffold_1504
Order: Halobacteriales (75%)
8 7990 bp 67.58 35.22 88.31
sw_11_scaffold_982
Class: Halobacteria (90.32%)
31 28542 bp 66.32 34.55 88.35
sw_11_scaffold_613
Order: Halobacteriales (62.5%)
8 7671 bp 65.73 36.24 88.42
sw_11_scaffold_284
Order: Halobacteriales (81.25%)
16 17043 bp 65.09 35.61 88.59
sw_11_scaffold_2312
Order: Halobacteriales (50%)
8 6810 bp 68.09 32.10 89.03
sw_11_scaffold_748
Order: Halobacteriales (78.57%)
14 19774 bp 66.28 36.39 89.18
sw_11_scaffold_1255
Order: Halobacteriales (72.73%)
11 10574 bp 67.94 35.97 89.34
sw_11_scaffold_949
Order: Halobacteriales (72.73%)
11 11325 bp 67.78 36.06 89.46
sw_11_scaffold_2140
Order: Natrialbales (50%)
6 4577 bp 65.55 36.54 89.53
sw_11_scaffold_1509
Order: Halobacteriales (50%)
8 4951 bp 69.38 40.44 89.92
sw_11_scaffold_2117
Class: Halobacteria (60%)
10 8389 bp 65.63 33.69 90.08
sw_11_scaffold_602
Order: Halobacteriales (50%)
16 15601 bp 66.63 36.12 90.38
sw_11_scaffold_1490
Order: Natrialbales (50%)
6 4983 bp 70.44 42.64 90.49
sw_11_scaffold_246
Order: Halobacteriales (66.67%)
15 13620 bp 65.43 32.88 90.70
sw_11_scaffold_377
Class: Halobacteria (85.71%)
14 9684 bp 68.88 39.26 91.02
Displaying items 1-50 of 104 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.