ggKbase home page
Advanced Search
Search Help

SW_5_UNK

In projects: SW_5  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 32.67 Longest contig: 221.74 Kbp Bin length: 59.88 Mbp GC content: 60.84 %
Contigs count: 21986 Features count: 79389 rRNAs count: 15 tRNAs count: 806

Genome completeness

megabin RP 47 / 55 MC: 39 BSCG 41 / 51 MC: 33 ASCG 38 / 38 MC: 37
Displaying items 151-200 of 21986 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_5_scaffold_115
Order: Halobacteriales (54.17%)
24 27555 bp 64.11 60.98 82.47
sw_5_scaffold_540 24 20006 bp 42.35 8.63 75.72
sw_5_scaffold_136
Domain: Bacteria (83.33%)
24 22524 bp 53.14 18.48 90.25
sw_5_scaffold_129
Class: Halobacteria (50%)
24 23152 bp 50.95 34.62 86.70
sw_5_scaffold_334 24 17765 bp 51.43 10.68 82.31
sw_5_scaffold_614 24 15965 bp 43.58 9.11 80.03
sw_5_scaffold_306
Class: Halobacteria (95.83%)
24 23049 bp 59.79 81.94 89.99
sw_5_scaffold_458 24 16566 bp 50.27 10.82 89.22
sw_5_scaffold_2028
Order: Halobacteriales (58.33%)
24 24628 bp 71.46 17.90 74.70
sw_5_scaffold_1714
Class: Halobacteria (62.5%)
24 24118 bp 67.64 16.01 79.09
sw_5_scaffold_402
Order: Halobacteriales (50%)
24 17331 bp 58.68 22.04 76.09
sw_5_scaffold_281 24 18742 bp 42.40 8.64 90.44
sw_5_scaffold_99
Class: Halobacteria (54.17%)
24 26236 bp 59.61 21.18 84.20
sw_5_scaffold_370 24 13326 bp 61.82 17.67 83.59
sw_5_scaffold_534
Class: Halobacteria (58.33%)
24 19148 bp 41.88 8.51 91.09
sw_5_scaffold_1896 23 15237 bp 63.06 16.36 96.63
sw_5_scaffold_1100 23 12680 bp 67.07 12.89 93.50
sw_5_scaffold_814
Class: Halobacteria (86.96%)
23 23018 bp 72.57 151.40 86.48
sw_5_scaffold_1855 23 12691 bp 61.62 93.94 77.05
sw_5_scaffold_181 23 19853 bp 61.74 69.65 82.69
sw_5_scaffold_751
Class: Halobacteria (69.57%)
23 20362 bp 67.30 120.33 80.69
sw_5_scaffold_1736
Class: Halobacteria (69.57%)
23 13802 bp 61.09 92.82 75.55
sw_5_scaffold_1716
Class: Halobacteria (86.96%)
23 18507 bp 66.61 109.52 84.00
sw_5_scaffold_215
Class: Halobacteria (91.3%)
23 18269 bp 57.81 22.26 85.72
sw_5_scaffold_1033 23 14945 bp 55.22 14.02 90.85
sw_5_scaffold_234 23 17866 bp 41.44 8.61 89.30
sw_5_scaffold_357 23 14519 bp 53.56 10.43 84.20
sw_5_scaffold_218
Class: Halobacteria (86.96%)
23 19809 bp 56.84 18.58 86.49
sw_5_scaffold_314 22 16226 bp 61.56 16.58 82.87
sw_5_scaffold_430
Class: Halobacteria (86.36%)
22 20011 bp 59.72 36.34 83.47
sw_5_scaffold_202 22 18952 bp 40.92 8.80 89.31
sw_5_scaffold_395
Class: Halobacteria (59.09%)
22 13901 bp 56.95 58.84 70.53
sw_5_scaffold_433 22 12249 bp 56.39 191.42 88.29
sw_5_scaffold_188
Domain: Archaea (54.55%)
22 19651 bp 42.93 8.16 85.35
sw_5_scaffold_1572
Order: Halobacteriales (54.55%)
22 19138 bp 70.19 136.44 88.43
sw_5_scaffold_1226 22 12245 bp 63.67 24.29 91.04
sw_5_scaffold_182
Order: Halobacteriales (59.09%)
22 19839 bp 70.50 148.76 86.00
sw_5_scaffold_404 22 12748 bp 59.58 27.76 86.37
sw_5_scaffold_627 22 11172 bp 44.35 8.09 69.46
sw_5_scaffold_225
Class: Halobacteria (57.14%)
21 18060 bp 61.44 18.21 87.39
sw_5_scaffold_262
Class: Halobacteria (66.67%)
21 22030 bp 57.03 16.27 86.45
sw_5_scaffold_2749
Class: Halobacteria (71.43%)
21 13160 bp 56.86 15.50 70.40
sw_5_scaffold_431 21 12271 bp 57.35 20.70 88.72
sw_5_scaffold_98
Class: Halobacteria (95.24%)
21 25432 bp 52.57 21.83 91.37
sw_5_scaffold_497 21 12095 bp 52.55 10.07 80.17
sw_5_scaffold_1108 21 15600 bp 52.65 9.12 81.38
sw_5_scaffold_381 21 15947 bp 51.81 10.11 89.66
sw_5_scaffold_148
Class: Halobacteria (61.9%)
21 21705 bp 63.92 39.03 83.72
sw_5_scaffold_365
Class: Halobacteria (90.48%)
21 20447 bp 58.16 16.79 82.16
sw_5_scaffold_418 21 15856 bp 43.72 64.65 95.83
Displaying items 151-200 of 21986 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.