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ACD7_88

Alias: ACD7_1409.66734.79

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD7_88_1

Not on your lists

1..189
DNA (189bp) protein (63aa)
1..189 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE22003.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD7_88_2

Not on your lists

comp(388..1608)
DNA (1221bp) protein (407aa)
Type II secretion system protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=378 to=400)
transmembrane_regions (db=TMHMM db_id=tmhmm from=226 to=243)
transmembrane_regions (db=TMHMM db_id=tmhmm from=171 to=193)
ACD7_88_3

Not on your lists

comp(1800..2393)
DNA (594bp) protein (198aa)
ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
seg (db=Seg db_id=seg from=100 to=114)
CLP_PROTEASE_SER (db=PatternScan db_id=PS00381 from=96 to=107 evalue=0.0 interpro_id=IPR018215 interpro_description=Peptidase S14, ClpP, active site GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
CLP_protease (db=HMMPfam db_id=PF00574 from=20 to=197 evalue=4.8e-82 interpro_id=IPR001907 interpro_description=Peptidase S14, ClpP GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
ACD7_88_4

Not on your lists

comp(2687..3976)
DNA (1290bp) protein (430aa)
tig; trigger factor (EC:5.2.1.8)
Trigger factor n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZR4_9FIRM (db=UNIREF evalue=2.0e-49 bit_score=200.0 identity=38.32 coverage=72.3255813953488)
coiled-coil (db=Coil db_id=coil from=116 to=153 evalue=NA)
seg (db=Seg db_id=seg from=361 to=386)
ACD7_88_5

Not on your lists

comp(4005..5258)
DNA (1254bp) protein (418aa)
nusA; transcription termination factor nusa
nusA; transcription termination factor nusa
NusA antitermination factor n=3 Tax=Clostridium thermocellum RepID=A3DE47_CLOTH (db=UNIREF evalue=3.0e-91 bit_score=339.0 identity=49.21 coverage=80.8612440191388)
seg (db=Seg db_id=seg from=405 to=417)
ACD7_88_6

Not on your lists

comp(5356..5535)
DNA (180bp) protein (60aa)
5356..5535 - (rbs_motif=TAA rbs_spacer=13bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE22008.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD7_88_7

Not on your lists

5555..6694
DNA (1140bp) protein (380aa)
MgpA protein
DHH phosphoesterases (db=superfamily db_id=SSF64182 from=16 to=329 evalue=7.8e-27)
TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) POLYMERASE FAMILY MEMBER (db=HMMPanther db_id=PTHR13734 from=157 to=310 evalue=1.2e-15)
POLYA POLYMERASE (db=HMMPanther db_id=PTHR13734:SF4 from=157 to=310 evalue=1.2e-15)
ACD7_88_8

Not on your lists

6786..9836
DNA (3051bp) protein (1017aa)
type IV-A pilus assembly ATPase PilB
coiled-coil (db=Coil db_id=coil from=149 to=170 evalue=NA)
seg (db=Seg db_id=seg from=73 to=89)
seg (db=Seg db_id=seg from=668 to=681)
ACD7_88_9

Not on your lists

comp(9880..10092)
DNA (213bp) protein (71aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
Uncharacterized protein {ECO:0000313|EMBL:EKE22011.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD7_88_10

Not on your lists

10237..11226
DNA (990bp) protein (330aa)
Holliday junction ATP-dependent DNA helicase ruvB n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6P9B1_CLOTS (db=UNIREF evalue=3.0e-114 bit_score=414.0 identity=63.67 coverage=93.9393939393939)
Holliday junction ATP-dependent DNA helicase ruvB
Holliday junction ATP-dependent DNA helicase ruvB
ruvB: Holliday junction DNA helicase RuvB (db=HMMTigr db_id=TIGR00635 from=22 to=326 evalue=9.5e-197 interpro_id=IPR004605 interpro_description=DNA helicase, Holliday junction RuvB type GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Molecular Function: four-way junction helicase activity (GO:0009378))
ACD7_88_11

Not on your lists

11246..11491
DNA (246bp) protein (82aa)
seg (db=Seg db_id=seg from=41 to=56)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=40 to=62)
Uncharacterized protein {ECO:0000313|EMBL:EKE22013.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD7_88_12

Not on your lists

11662..12237
DNA (576bp) protein (192aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=87)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
DUF304 (db=HMMPfam db_id=PF03703 from=91 to=162 evalue=2.0e-05 interpro_id=IPR005182 interpro_description=Protein of unknown function DUF304, transmembrane flanked domain, bacterial)
Uncharacterized protein {ECO:0000313|EMBL:EKE21988.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD7_88_13

Not on your lists

comp(12692..13273)
DNA (582bp) protein (194aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=99 to=121)
seg (db=Seg db_id=seg from=127 to=138)
seg (db=Seg db_id=seg from=94 to=105)
seg (db=Seg db_id=seg from=19 to=38)
ACD7_88_14

Not on your lists

comp(13293..14063)
DNA (771bp) protein (257aa)
hypothetical protein (db=KEGG evalue=1.0e-20 bit_score=103.0 identity=30.14 coverage=82.8793774319066)
coiled-coil (db=Coil db_id=coil from=211 to=232 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE21990.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD7_88_15

Not on your lists

comp(14048..14458)
DNA (411bp) protein (137aa)
DNA mismatch endonuclease Vsr
seg (db=Seg db_id=seg from=123 to=136)
Very short patch repair endonuclease (db=HMMPIR db_id=PIRSF018267 from=1 to=135 evalue=5.5e-65 interpro_id=IPR004603 interpro_description=DNA mismatch endonuclease vsr GO=Molecular Function: endonuclease activity (GO:0004519), Biological Process: mismatch repair (GO:0006298))
vsr: DNA mismatch endonuclease Vsr (db=HMMTigr db_id=TIGR00632 from=1 to=117 evalue=3.9e-48 interpro_id=IPR004603 interpro_description=DNA mismatch endonuclease vsr GO=Molecular Function: endonuclease activity (GO:0004519), Biological Process: mismatch repair (GO:0006298))
ACD7_88_16

Not on your lists

comp(14461..15222)
DNA (762bp) protein (254aa)
restriction endonuclease, HinP1I family
hypothetical protein HcinC1_08835 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI000197A148 (db=UNIREF evalue=2.0e-74 bit_score=282.0 identity=54.51 coverage=95.2755905511811)
R-HINP1I (db=HMMPfam db_id=PF11463 from=44 to=251 evalue=6.6e-88 interpro_id=IPR021107 interpro_description=Restriction endonuclease, type II, HinP1I)
Uncharacterized protein {ECO:0000313|EMBL:EKE21992.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD7_88_17

Not on your lists

comp(15227..16219)
DNA (993bp) protein (331aa)
DNA-cytosine methyltransferase (EC:2.1.1.37)
DNA-cytosine methyltransferase (EC:2.1.1.37)
DNA-cytosine methyltransferase n=1 Tax=Haemophilus somnus 2336 RepID=B0USN8_HAES2 (db=UNIREF evalue=7.0e-101 bit_score=370.0 identity=56.04 coverage=95.4682779456193)
dcm: DNA (cytosine-5-)-methyltransferase (db=HMMTigr db_id=TIGR00675 from=12 to=324 evalue=2.0e-96 interpro_id=IPR001525 interpro_description=DNA methylase, C-5 cytosine-specific GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA methylation (GO:0006306))
ACD7_88_18

Not on your lists

comp(16266..16904)
DNA (639bp) protein (213aa)
transcriptional repressor, LexA family; K01356 repressor LexA [EC:3.4.21.88] (db=KEGG evalue=1.0e-12 bit_score=76.3 identity=34.03 coverage=84.9765258215963)
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=92 to=205 evalue=2.6e-17 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
no description (db=Gene3D db_id=G3DSA:2.10.109.10 from=79 to=205 evalue=3.8e-13 interpro_id=IPR011056 interpro_description=Peptidase S24/S26A/S26B/S26C, beta-ribbon domain)
Peptidase_S24 (db=HMMPfam db_id=PF00717 from=116 to=189 evalue=4.9e-08 interpro_id=IPR019759 interpro_description=Peptidase S24/S26A/S26B, conserved region)
ACD7_88_19

Not on your lists

17166..17468
DNA (303bp) protein (101aa)
hypothetical protein
hypothetical protein alias=ACD7_1409.66734.79G0019,ACD7_1409.66734.79_19,ACD7_C00088G00019 id=130618 tax=ACD7 species=Thermosipho melanesiensis genus=Thermosipho taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:EKE21995.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD7_88_20

Not on your lists

comp(17626..20184)
DNA (2559bp) protein (853aa)
hypothetical protein
hypothetical protein
Penicillin-binding protein, 1A family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UUN3_ROSS1 (db=UNIREF evalue=2.0e-123 bit_score=447.0 identity=35.1 coverage=80.8909730363423)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
ACD7_88_21

Not on your lists

comp(20324..21733)
DNA (1410bp) protein (470aa)
20324..21733 - (rbs_motif=TAA rbs_spacer=3bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE21997.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD7_88_22

Not on your lists

comp(21763..22686)
DNA (924bp) protein (308aa)
rimK; Ribosomal protein S6 modification protein
RimK (db=HMMPfam db_id=PF08443 from=100 to=296 evalue=7.0e-41 interpro_id=IPR013651 interpro_description=ATP-grasp fold, RimK-type)
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=99 to=299 evalue=2.7e-37)
rimK_fam: alpha-L-glutamate ligases, RimK fa (db=HMMTigr db_id=TIGR00768 from=7 to=297 evalue=5.3e-24 interpro_id=IPR004666 interpro_description=S6 modification enzyme RimK GO=Biological Process: protein modification process (GO:0006464))
ACD7_88_23

Not on your lists

comp(22715..24499)
DNA (1785bp) protein (595aa)
alpha-L-glutamate ligase
coiled-coil (db=Coil db_id=coil from=404 to=425 evalue=NA)
seg (db=Seg db_id=seg from=65 to=75)
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=103 to=284 evalue=9.0e-31)
ACD7_88_24

Not on your lists

comp(24559..25980)
DNA (1422bp) protein (474aa)
alpha-L-glutamate ligase-like protein
Alpha-L-glutamate ligase-like protein n=1 Tax=bacterium S5 RepID=D3C0C9_9BACT (db=UNIREF evalue=7.0e-62 bit_score=241.0 identity=44.44 coverage=63.2911392405063)
seg (db=Seg db_id=seg from=45 to=57)
seg (db=Seg db_id=seg from=146 to=158)
ACD7_88_25

Not on your lists

comp(26067..26735)
DNA (669bp) protein (223aa)
transglutaminase-like protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=71 to=90)
ACD7_88_26

Not on your lists

comp(27075..27596)
DNA (522bp) protein (174aa)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
RUVC (db=PatternScan db_id=PS01321 from=120 to=155 evalue=0.0 interpro_id=IPR020563 interpro_description=Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site)
RuvC (db=HMMPfam db_id=PF02075 from=10 to=158 evalue=7.8e-55 interpro_id=IPR002176 interpro_description=Crossover junction endodeoxyribonuclease RuvC GO=Molecular Function: endodeoxyribonuclease activity (GO:0004520), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
no description (db=Gene3D db_id=G3DSA:3.30.420.10 from=8 to=167 evalue=7.9e-51)
ACD7_88_27

Not on your lists

comp(27901..28680)
DNA (780bp) protein (260aa)
Transcriptional regulator, TrmB
Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHZ5_9BACT (db=UNIREF evalue=2.0e-14 bit_score=83.2 identity=26.67 coverage=91.5384615384615)
TrmB (db=HMMPfam db_id=PF01978 from=8 to=76 evalue=6.9e-17 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=9 to=96 evalue=3.6e-10)
ACD7_88_28

Not on your lists

29745..29999
DNA (255bp) protein (85aa)
29745..29999 + (rbs_motif=AAA rbs_spacer=3bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE21949.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD7_88_29

Not on your lists

31113..32321
DNA (1209bp) protein (403aa)
putative ATPase (AAA+ superfamily)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=3 to=220 evalue=9.8e-18)
Uncharacterized protein {ECO:0000313|EMBL:EKE21950.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein; K07133 alias=ACD7_1409.66734.79G0029,ACD7_1409.66734.79_29,ACD7_C00088G00029 id=130628 tax=ACD7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae organism_group=OD1-i organism_desc=OD1-i
ACD7_88_30

Not on your lists

comp(32457..33248)
DNA (792bp) protein (264aa)
hypothetical protein
DUF1814 (db=HMMPfam db_id=PF08843 from=38 to=201 evalue=1.3e-22 interpro_id=IPR014942 interpro_description=Protein of unknown function DUF1814)
Uncharacterized protein {ECO:0000313|EMBL:EKE21951.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein; K09144 hypothetical protein alias=ACD7_1409.66734.79G0030,ACD7_1409.66734.79_30,ACD7_C00088G00030 id=130622 tax=ACD7 species=Nitrosomonas europaea genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria organism_group=OD1-i organism_desc=OD1-i
Displaying items 1-30 of 65 in total

View Taxonomy