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AMDSBA4_21

Alias: AMDSBA4_C20

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Displaying items 1-30 of 60 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_21_1
unknown

Not on your lists

comp(3..77)
DNA (75bp) protein (25aa)
3..77 - ( gc_cont=0.547)
AMDSBA4_21_2
Desulfosporosinus sp. Tol-M, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(74..1252)
DNA (1179bp) protein (393aa)
Putative uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LAS9_9FIRM (db=UNIREF evalue=3.2e-39 bit_score=168.3 identity=31.2 coverage=96.18320610687023)
(db=HMMPfam db_id=PF10923 from=161 to=328 evalue=2.3e-18 interpro_id=IPR021228 interpro_description=Protein of unknown function DUF2791)
Uncharacterized protein {ECO:0000313|EMBL:KGP74788.1}; TaxID=1536651 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. Tol-M.
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2B3Z6_9CLOT
AMDSBA4_21_3
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1275..1754)
DNA (480bp) protein (160aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Ammonifex degensii KC4 RepID=C9R980_AMMDK (db=UNIREF evalue=9.4e-14 bit_score=82.4 identity=33.8 coverage=95.625)
Uncharacterized protein {ECO:0000313|EMBL:ACX52859.1}; TaxID=429009 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Amm
AMDSBA4_21_4
unknown

Not on your lists

comp(1762..2100)
DNA (339bp) protein (113aa)
1762..2100 - ( gc_cont=0.472)
AMDSBA4_21_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2202..2834)
DNA (633bp) protein (211aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5C2_9BACT (db=UNIREF evalue=3.1e-33 bit_score=147.5 identity=42.1 coverage=96.2085308056872)
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=162 to=189 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
CheY-like (db=superfamily db_id=SSF52172 from=2 to=182 evalue=4.0e-33 interpro_id=IPR011006 interpro_description=CheY-like superfamily)
(db=HMMPfam db_id=PF00072 from=7 to=118 evalue=2.0e-29 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA4_21_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2837..4414)
DNA (1578bp) protein (526aa)
liaS; histidine kinase rbh
liaS; histidine kinase rbh
Histidine kinase n=2 Tax=Sulfobacillus acidophilus RepID=F8I1X0_SULAT (db=UNIREF evalue=5.9e-113 bit_score=413.7 identity=44.2 coverage=98.47908745247148)
AMDSBA4_21_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4411..5502)
DNA (1092bp) protein (364aa)
S-adenosylmethionine--tRNA ribosyltransferase-isomerase
Queuosine biosynthesis protein n=1 Tax=Frankia sp. CN3 RepID=G6HJG0_9ACTO (db=UNIREF evalue=1.7e-47 bit_score=195.7 identity=37.6 coverage=95.6043956043956)
QueA-like (db=superfamily db_id=SSF111337 from=1 to=350 evalue=8.7e-65 interpro_id=IPR003699 interpro_description=Queuosine biosynthesis protein GO=Biological Process: queuosine biosynthetic process (GO:0008616), Molecular Function: transferase activity (GO:0016740), Molecular Function: isomerase activity (GO:0016853))
(db=HMMPfam db_id=PF02547 from=25 to=217 evalue=2.9e-26 interpro_id=IPR003699 interpro_description=Queuosine biosynthesis protein GO=Biological Process: queuosine biosynthetic process (GO:0008616), Molecular Function: transferase activity (GO:0016740), Molecular Function: isomerase activity (GO:0016853))
AMDSBA4_21_8
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5499..6275)
DNA (777bp) protein (259aa)
seg (db=Seg db_id=seg from=207 to=218)
seg (db=Seg db_id=seg from=27 to=40)
SHORT-CHAIN DEHYDROGENASES/REDUCTASE FAMILY MEMBER (db=HMMPanther db_id=PTHR19410 from=16 to=246 evalue=2.7e-44)
SEPIAPTERIN REDUCTASE (db=HMMPanther db_id=PTHR19410:SF116 from=16 to=246 evalue=2.7e-44)
AMDSBA4_21_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6451..6786
DNA (336bp) protein (112aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSN4_9FIRM (db=UNIREF evalue=2.0e-15 bit_score=87.4 identity=41.0 coverage=88.39285714285714)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSN4_SULAD
Uncharacterized protein {ECO:0000313|EMBL:AEW04411.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
AMDSBA4_21_10
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(6783..8210)
DNA (1428bp) protein (476aa)
FAD dependent oxidoreductase
Putative uncharacterized protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TH97_9MICO (db=UNIREF evalue=1.7e-79 bit_score=302.4 identity=39.3 coverage=92.85714285714286)
(db=HMMPfam db_id=PF01266 from=45 to=410 evalue=1.0e-49 interpro_id=IPR006076 interpro_description=FAD dependent oxidoreductase GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_21_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8252..9169)
DNA (918bp) protein (306aa)
rihA; cytidine/uridine-specific hydrolase rbh
Inosine-uridine preferring nucleoside hydrolase n=1 Tax=Crithidia fasciculata RepID=IUNH_CRIFA (db=UNIREF evalue=6.8e-37 bit_score=160.2 identity=31.1 coverage=97.05882352941177)
seg (db=Seg db_id=seg from=16 to=25)
Nucleoside hydrolase (db=superfamily db_id=SSF53590 from=2 to=305 evalue=1.9e-80 interpro_id=IPR001910 interpro_description=Inosine/uridine-preferring nucleoside hydrolase domain)
AMDSBA4_21_12
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9344..10528)
DNA (1185bp) protein (395aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=157 to=179)
transmembrane_regions (db=TMHMM db_id=tmhmm from=215 to=237)
transmembrane_regions (db=TMHMM db_id=tmhmm from=247 to=269)
transmembrane_regions (db=TMHMM db_id=tmhmm from=276 to=298)
AMDSBA4_21_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10740..12341
DNA (1602bp) protein (534aa)
amino acid/polyamine/organocation transporter rbh
amino acid/polyamine/organocation transporter rbh
Amino acid transporter n=1 Tax=Acidilobus saccharovorans 345-15 RepID=D9PZB5_ACIS3 (db=UNIREF evalue=2.8e-54 bit_score=218.8 identity=39.6 coverage=48.31460674157304)
transmembrane_regions (db=TMHMM db_id=tmhmm from=495 to=512)
AMDSBA4_21_14
Bacillus megaterium, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12428..13687
DNA (1260bp) protein (420aa)
aminotransferase class I and II family protein
Acetylornithine aminotransferase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZP5_THERP (db=UNIREF evalue=1.4e-61 bit_score=242.7 identity=37.9 coverage=88.57142857142857)
seg (db=Seg db_id=seg from=137 to=148)
AA_TRANSFER_CLASS_3 (db=PatternScan db_id=PS00600 from=236 to=273 evalue=0.0 interpro_id=IPR005814 interpro_description=Aminotransferase class-III GO=Molecular Function: transaminase activity (GO:0008483), Molecular Function: pyridoxal phosphate binding (GO:0030170))
AMDSBA4_21_15
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

13706..15265
DNA (1560bp) protein (520aa)
NAD-dependent aldehyde dehydrogenase
1-pyrroline-5-carboxylate dehydrogenase 1 n=1 Tax=Bacillus halodurans C-125 RepID=ROCA1_BACHD (db=UNIREF evalue=1.7e-117 bit_score=428.7 identity=41.4 coverage=98.26923076923076)
seg (db=Seg db_id=seg from=337 to=348)
seg (db=Seg db_id=seg from=297 to=306)
AMDSBA4_21_16
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15269..16063
DNA (795bp) protein (265aa)
transcriptional regulator
Transcriptional regulator, IclR family n=3 Tax=Bradyrhizobiaceae RepID=B6JH08_OLICO (db=UNIREF evalue=1.8e-17 bit_score=95.5 identity=27.1 coverage=98.86792452830188)
GAF domain-like (db=superfamily db_id=SSF55781 from=77 to=255 evalue=3.0e-44)
no description (db=Gene3D db_id=G3DSA:3.30.450.40 from=77 to=258 evalue=2.4e-43)
AMDSBA4_21_17
CG_Anaero_03, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

16105..16923
DNA (819bp) protein (273aa)
catI; 3-oxoadipate:succinyl-CoA transferase subunit B
Putative coenzyme A transferase, subunit A n=1 Tax=Citreicella sp. 357 RepID=I1AX07_9RHOB (db=UNIREF evalue=4.1e-17 bit_score=94.4 identity=30.0 coverage=82.41758241758241)
seg (db=Seg db_id=seg from=161 to=175)
no description (db=Gene3D db_id=G3DSA:3.40.1080.10 from=1 to=267 evalue=2.0e-66)
AMDSBA4_21_18
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

16916..17632
DNA (717bp) protein (239aa)
coenzyme A transferase
K01040 glutaconate CoA-transferase, subunit B n=8 Tax=Sinorhizobium RepID=G9AER0_RHIFH (db=UNIREF evalue=1.3e-43 bit_score=182.2 identity=41.2 coverage=93.72384937238493)
no description (db=Gene3D db_id=G3DSA:3.40.810.20 from=5 to=228 evalue=6.6e-58)
NagB/RpiA/CoA transferase-like (db=superfamily db_id=SSF100950 from=1 to=229 evalue=2.2e-54)
AMDSBA4_21_19
Deinococcus peraridilitoris, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

17633..18949
DNA (1317bp) protein (439aa)
Aminotransferase class-III n=3 Tax=Burkholderia cenocepacia RepID=G7HR72_9BURK (db=UNIREF evalue=1.5e-45 bit_score=189.5 identity=31.9 coverage=93.39407744874715)
seg (db=Seg db_id=seg from=269 to=284)
AA_TRANSFER_CLASS_3 (db=PatternScan db_id=PS00600 from=238 to=275 evalue=0.0 interpro_id=IPR005814 interpro_description=Aminotransferase class-III GO=Molecular Function: transaminase activity (GO:0008483), Molecular Function: pyridoxal phosphate binding (GO:0030170))
AMINOTRANSFERASE CLASS III (db=HMMPanther db_id=PTHR11986 from=3 to=434 evalue=8.7e-140 interpro_id=IPR005814 interpro_description=Aminotransferase class-III GO=Molecular Function: transaminase activity (GO:0008483), Molecular Function: pyridoxal phosphate binding (GO:0030170))
AMDSBA4_21_20
Thermoplasmatales archaeon Gpl, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

19401..20672
DNA (1272bp) protein (424aa)
transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=310 to=327)
transmembrane_regions (db=TMHMM db_id=tmhmm from=376 to=398)
seg (db=Seg db_id=seg from=201 to=215)
AMDSBA4_21_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20729..21304)
DNA (576bp) protein (192aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TT52_9FIRM (db=UNIREF evalue=2.2e-65 bit_score=254.2 identity=68.5 coverage=91.14583333333334)
seg (db=Seg db_id=seg from=153 to=164)
seg (db=Seg db_id=seg from=66 to=83)
AMDSBA4_21_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21602..22783
DNA (1182bp) protein (394aa)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TVB0_9FIRM (db=UNIREF evalue=3.5e-94 bit_score=350.9 identity=48.1 coverage=96.19289340101524)
hypothetical protein rbh
hypothetical protein rbh
transmembrane_regions (db=TMHMM db_id=tmhmm from=236 to=258)
AMDSBA4_21_23
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

Not on your lists

22867..23205
DNA (339bp) protein (113aa)
ArsR family transcriptional regulator
Regulatory protein ArsR n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GE70_9FIRM (db=UNIREF evalue=2.4e-11 bit_score=73.9 identity=40.4 coverage=80.53097345132744)
no description (db=HMMSmart db_id=SM00418 from=10 to=91 evalue=7.6e-30 interpro_id=IPR001845 interpro_description=HTH ArsR-type DNA-binding domain GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=5 to=82 evalue=1.0e-25)
AMDSBA4_21_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23225..24523
DNA (1299bp) protein (433aa)
arsB; ArsB
arsB; ArsB
Putative arsenite efflux pump (Fragment) n=2 Tax=Bacillus RepID=D2EB80_9BACI (db=UNIREF evalue=3.2e-56 bit_score=224.9 identity=48.9 coverage=50.34642032332564)
transmembrane_regions (db=TMHMM db_id=tmhmm from=179 to=201)
AMDSBA4_21_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24684..25916
DNA (1233bp) protein (411aa)
cysteine desulfurase rbh
Cysteine desulfurase family protein n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IBW5_9CHLR (db=UNIREF evalue=2.2e-99 bit_score=368.2 identity=47.3 coverage=99.02676399026764)
am_tr_V_VC1184: cysteine desulfurase f (db=HMMTigr db_id=TIGR01976 from=3 to=403 evalue=1.3e-146 interpro_id=IPR011340 interpro_description=Cysteine desulfurase-related)
AMDSBA4_21_26

Not on your lists

25906..26703
DNA (798bp) protein (266aa)
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CC38_THET1 (db=UNIREF evalue=4.0e-41 bit_score=174.1 identity=40.9 coverage=92.10526315789474)
ADH_SHORT (db=PatternScan db_id=PS00061 from=140 to=168 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=3 to=248 evalue=2.2e-58)
AMDSBA4_21_27
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26712..27890)
DNA (1179bp) protein (393aa)
hypothetical protein
Possible multidrug efflux transporter, MFS family n=4 Tax=Prochlorococcus marinus RepID=A2BRM4_PROMS (db=UNIREF evalue=2.9e-08 bit_score=65.5 identity=20.8 coverage=88.54961832061069)
transmembrane_regions (db=TMHMM db_id=tmhmm from=357 to=379)
seg (db=Seg db_id=seg from=19 to=24)
AMDSBA4_21_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27928..28149)
DNA (222bp) protein (74aa)
(db=HMMPfam db_id=PF03576 from=3 to=54 evalue=8.6e-11 interpro_id=IPR005321 interpro_description=Peptidase S58, DmpA)
DmpA/ArgJ-like (db=superfamily db_id=SSF56266 from=1 to=72 evalue=1.2e-09 interpro_id=IPR016117 interpro_description=Peptidase S58 DmpA/arginine biosynthesis protein ArgJ GO=Molecular Function: acetyl-CoA:L-glutamate N-acetyltransferase activity (GO:0004042), Molecular Function: glutamate N-acetyltransferase activity (GO:0004358), Biological Process: arginine biosynthetic process (GO:0006526))
no description (db=Gene3D db_id=G3DSA:3.60.70.12 from=3 to=73 evalue=1.5e-08 interpro_id=IPR005321 interpro_description=Peptidase S58, DmpA)
peptidase S58 DmpA
AMDSBA4_21_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28121..28858)
DNA (738bp) protein (246aa)
peptidase S58 DmpA
T4 protein, peptidase family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL71_9FIRM (db=UNIREF evalue=3.3e-26 bit_score=124.4 identity=41.7 coverage=75.20325203252033)
seg (db=Seg db_id=seg from=28 to=39)
seg (db=Seg db_id=seg from=140 to=157)
AMDSBA4_21_30
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29019..30302)
DNA (1284bp) protein (428aa)
hypothetical protein
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase n=1 Tax=Nocardia brasiliensis ATCC 700358 RepID=H5S263_9NOCA (db=UNIREF evalue=1.3e-54 bit_score=219.5 identity=36.1 coverage=90.18691588785047)
seg (db=Seg db_id=seg from=286 to=297)
seg (db=Seg db_id=seg from=350 to=363)
Displaying items 1-30 of 60 in total

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