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AMDSBAU_74

Alias: SULFO_OTHER_74

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Displaying 29 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBAU_74_1
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..238)
DNA (237bp) protein (79aa)
Predicted transcriptional regulator xre family {ECO:0000313|EMBL:CDA91305.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental sampl
(db=HMMPfam db_id=PF01381 from=2 to=53 evalue=1.2e-13 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=HMMSmart db_id=SM00530 from=2 to=53 evalue=1.1e-07 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=1 to=57 evalue=5.6e-09 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
AMDSBAU_74_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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360..590
DNA (231bp) protein (77aa)
Uncharacterized protein {ECO:0000313|EMBL:ADV00022.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
(db=HMMPfam db_id=PF01381 from=4 to=56 evalue=1.1e-17 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=3 to=62 evalue=4.9e-13 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=2 to=62 evalue=4.4e-13 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
AMDSBAU_74_3
unknown

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669..938
DNA (270bp) protein (90aa)
669..938 + ( gc_cont=0.570)
AMDSBAU_74_4
unknown

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935..1132
DNA (198bp) protein (66aa)
935..1132 + ( gc_cont=0.631)
AMDSBAU_74_5
RIFOXYC2_FULL_RIF01_39_67_curated, RIF1, Bacteria

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1134..2114
DNA (981bp) protein (327aa)
Tax=RIFOXYC2_FULL_RIF01_39_67_curated
Uncharacterized protein n=1 Tax=Lactobacillus mucosae LM1 RepID=H3RST7_9LACO (db=UNIREF evalue=3.2e-20 bit_score=105.1 identity=32.9 coverage=61.46788990825688)
AMDSBAU_74_6
RIFOXYA2_FULL_Elusimicrobia_39_19_curated, Elusimicrobia, Bacteria

Not on your lists

2107..2808
DNA (702bp) protein (234aa)
Uncharacterized protein Tax=RIFOXYA2_FULL_Elusimicrobia_39_19_curated
2107..2808 + ( gc_cont=0.554)
AMDSBAU_74_7
unknown

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2824..3279
DNA (456bp) protein (152aa)
2824..3279 + ( gc_cont=0.520)
AMDSBAU_74_8
unknown

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3279..3419
DNA (141bp) protein (47aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
AMDSBAU_74_9
unknown

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3419..3625
DNA (207bp) protein (69aa)
3419..3625 + ( gc_cont=0.580)
AMDSBAU_74_10
unknown

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3612..3812
DNA (201bp) protein (67aa)
3612..3812 + ( gc_cont=0.607)
AMDSBAU_74_11
unknown

Not on your lists

3775..3960
DNA (186bp) protein (62aa)
seg (db=Seg db_id=seg from=44 to=56)
seg (db=Seg db_id=seg from=5 to=20)
AMDSBAU_74_12
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

3965..4894
DNA (930bp) protein (310aa)
Uncharacterized protein {ECO:0000313|EMBL:EAX47571.1}; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans N
Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR38_9FIRM (db=UNIREF evalue=4.7e-29 bit_score=134.4 identity=36.0 coverage=61.935483870967744)
HNH endonuclease
coiled-coil (db=Coil db_id=coil from=150 to=171 evalue=NA)
AMDSBAU_74_13

Not on your lists

4872..6869
DNA (1998bp) protein (666aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN07112.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
dnaB-2; replicative DNA helicase
DNA replication protein DnaC n=5 Tax=Selenomonas RepID=C4V1W0_9FIRM
coiled-coil (db=Coil db_id=coil from=77 to=98 evalue=NA)
AMDSBAU_74_14
unknown

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6873..7148
DNA (276bp) protein (92aa)
6873..7148 + ( gc_cont=0.667)
AMDSBAU_74_15
unknown

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7145..7447
DNA (303bp) protein (101aa)
7145..7447 + ( gc_cont=0.650)
AMDSBAU_74_16
Salmonella phage SSE-121, Caudovirales, Viruses

Not on your lists

7447..8025
DNA (579bp) protein (193aa)
Uncharacterized protein {ECO:0000313|EMBL:AFU63816.1}; TaxID=1204529 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Salmonella phage SSE-121.;"
Uncharacterized protein n=2 Tax=unclassified Myoviridae RepID=K4I1M9_9VIRU (db=UNIREF evalue=2.2e-21 bit_score=108.2 identity=38.4 coverage=74.09326424870466)
DNA methyltransferase
N6_MTASE (db=PatternScan db_id=PS00092 from=105 to=111 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
AMDSBAU_74_17
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8022..9278
DNA (1257bp) protein (419aa)
DNA (cytosine-5-)-methyltransferase (EC:2.1.1.37)
Putative dna (Cytosine-5-)-methyltransferase protein {ECO:0000313|EMBL:CBA14748.1}; EC=2.1.1.37 {ECO:0000313|EMBL:CBA14748.1};; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xan
Cytosine-specific methyltransferase n=1 Tax=Xanthomonas albilineans GPE PC73 RepID=D2U9G0_XANAP (db=UNIREF evalue=3.3e-70 bit_score=271.6 identity=42.7 coverage=92.60143198090692)
C5_MTASE_1 (db=PatternScan db_id=PS00094 from=63 to=75 evalue=0.0 interpro_id=IPR018117 interpro_description=DNA methylase, C-5 cytosine-specific, active site GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA methylation (GO:0006306))
AMDSBAU_74_18
unknown

Not on your lists

comp(9172..9396)
DNA (225bp) protein (75aa)
9172..9396 - ( gc_cont=0.533)
AMDSBAU_74_19
unknown

Not on your lists

9507..9755
DNA (249bp) protein (83aa)
9507..9755 + ( gc_cont=0.606)
AMDSBAU_74_20
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

9752..10084
DNA (333bp) protein (111aa)
PF14359 domain protein {ECO:0000313|EMBL:ERF61893.1}; TaxID=1125725 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. socranskii VPI DR
Putative bacteriophage-related protein n=2 Tax=Sulfobacillus thermotolerans RepID=G5CJ23_9FIRM (db=UNIREF evalue=6.1e-16 bit_score=89.4 identity=50.0 coverage=84.68468468468468)
hypothetical protein
N-(deoxy)ribosyltransferase-like (db=superfamily db_id=SSF52309 from=1 to=100 evalue=1.6e-10)
AMDSBAU_74_21
unknown

Not on your lists

10081..10218
DNA (138bp) protein (46aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
seg (db=Seg db_id=seg from=10 to=23)
AMDSBAU_74_22
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10222..10785
DNA (564bp) protein (188aa)
RNA polymerase, sigma 28 subunit, FliA/WhiG family {ECO:0000313|EMBL:EED05961.1}; TaxID=543302 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alic
RNA polymerase, sigma 28 subunit, FliA/WhiG family n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DV94_9BACL (db=UNIREF evalue=9.4e-09 bit_score=66.2 identity=28.1 coverage=88.82978723404256)
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=17 to=89 evalue=1.3e-09 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma facto
AMDSBAU_74_23
unknown

Not on your lists

10899..11684
DNA (786bp) protein (262aa)
(db=HMMPfam db_id=PF00196 from=151 to=180 evalue=5.3e-05 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
AMDSBAU_74_24
unknown

Not on your lists

11741..12262
DNA (522bp) protein (174aa)
seg (db=Seg db_id=seg from=152 to=162)
AMDSBAU_74_25
unknown

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12255..12863
DNA (609bp) protein (203aa)
12255..12863 + ( gc_cont=0.568)
AMDSBAU_74_26
unknown

Not on your lists

12908..13300
DNA (393bp) protein (131aa)
coiled-coil (db=Coil db_id=coil from=77 to=112 evalue=NA)
seg (db=Seg db_id=seg from=89 to=107)
seg (db=Seg db_id=seg from=73 to=86)
AMDSBAU_74_27
unknown

Not on your lists

13290..13478
DNA (189bp) protein (63aa)
13290..13478 + ( gc_cont=0.534)
AMDSBAU_74_28
unknown

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13475..13957
DNA (483bp) protein (161aa)
13475..13957 + ( gc_cont=0.520)
AMDSBAU_74_29
unknown

Not on your lists

13954..14244
DNA (291bp) protein (97aa)
13954..14244 + ( gc_cont=0.591)
Displaying 29 items

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