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anamox1_Sphingobacteriales_42_27_curated

anamox1_Sphingobacteriales_42_1
In projects: anamox1  |  LAC_year1  |  LAC_reactor_startup

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: anamox1_Sphingobacteriales_42_27 Manually curated genome
Original version: anamox1_Sphingobacteriales_42_27

Properties

Avg. coverage: 1.00 Longest contig: 154.97 Kbp Bin length: 3.49 Mbp GC content: 42.00 %
Contigs count: 95 Features count: 3068 rRNAs count: 1 tRNAs count: 41

Genome completeness

near complete RP 53 / 55 MC: 2 BSCG 51 / 51 MC: 1 ASCG 13 / 38
Displaying items 1-50 of 95 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
anamox1_curated_scaffold_3763
Order: Sphingobacteriales (54.55%)
11 15314 bp 41.20 1.00 72.78
anamox1_curated_scaffold_16045
Species: Niastella koreensis (60%)
5 4482 bp 42.41 1.00 72.82
anamox1_curated_scaffold_3422
Phylum: Bacteroidetes (75%)
12 10489 bp 39.74 1.00 75.74
anamox1_curated_scaffold_9553
Phylum: Bacteroidetes (71.43%)
7 8104 bp 40.76 1.00 76.37
anamox1_curated_scaffold_3802
Order: Sphingobacteriales (64.29%)
14 10027 bp 41.99 1.00 81.53
anamox1_curated_scaffold_7754
Phylum: Bacteroidetes (78.57%)
14 12984 bp 41.77 1.00 81.82
anamox1_curated_scaffold_6459
Order: Sphingobacteriales (54.55%)
11 13519 bp 43.12 1.00 81.95
anamox1_curated_scaffold_1572
Order: Sphingobacteriales (66.67%)
21 20543 bp 41.69 1.00 82.29
anamox1_curated_scaffold_3332
Order: Sphingobacteriales (57.89%)
19 20823 bp 41.66 1.00 85.41
anamox1_curated_scaffold_7505
Phylum: Bacteroidetes (83.33%)
6 7147 bp 43.32 1.00 85.50
anamox1_curated_scaffold_4146
Phylum: Bacteroidetes (68.18%)
22 23740 bp 41.26 1.00 85.56
anamox1_curated_scaffold_4732
Order: Sphingobacteriales (50%)
10 12343 bp 42.99 1.00 85.63
anamox1_curated_scaffold_2036
Order: Sphingobacteriales (58.62%)
29 29768 bp 42.19 1.00 85.80
anamox1_curated_scaffold_15183
Order: Sphingobacteriales (83.33%)
6 4937 bp 42.58 1.00 85.98
anamox1_curated_scaffold_3901
Phylum: Bacteroidetes (69.23%)
26 35445 bp 41.88 1.00 85.99
anamox1_curated_scaffold_1558
Order: Sphingobacteriales (62.07%)
29 34262 bp 41.21 1.00 85.99
anamox1_curated_scaffold_2168
Phylum: Bacteroidetes (72.22%)
36 32679 bp 42.11 1.00 86.35
anamox1_curated_scaffold_1209
Order: Sphingobacteriales (53.06%)
49 49888 bp 41.83 1.00 86.38
anamox1_curated_scaffold_11828
Domain: Bacteria (71.43%)
7 7512 bp 38.72 1.00 86.38
anamox1_curated_scaffold_6855
Species: Gillisia limnaea (80%)
5 9310 bp 42.56 1.00 86.55
anamox1_curated_scaffold_438
Order: Sphingobacteriales (65.31%)
49 48058 bp 41.55 1.00 86.68
anamox1_curated_scaffold_2838
Phylum: Bacteroidetes (78.95%)
19 30538 bp 42.70 1.00 86.79
anamox1_curated_scaffold_8247
Phylum: Bacteroidetes (80%)
5 5199 bp 42.39 1.00 86.90
anamox1_curated_scaffold_2714
Species: Niastella koreensis (75%)
8 12686 bp 43.18 1.00 86.91
anamox1_curated_scaffold_8426
Phylum: Bacteroidetes (50%)
6 5367 bp 42.95 1.00 87.14
anamox1_curated_scaffold_2611
Phylum: Bacteroidetes (83.33%)
24 28214 bp 40.40 1.00 87.69
anamox1_curated_scaffold_20223
Phylum: Bacteroidetes (50%)
6 4938 bp 38.52 1.00 87.79
anamox1_curated_scaffold_1943
Order: Sphingobacteriales (58.33%)
24 25773 bp 43.06 1.00 87.93
anamox1_curated_scaffold_12571
Species: Niastella koreensis (50%)
4 4179 bp 43.36 1.00 88.30
anamox1_curated_scaffold_801
Order: Sphingobacteriales (55.17%)
29 31703 bp 42.32 1.00 88.50
anamox1_curated_scaffold_1271
Phylum: Bacteroidetes (85.71%)
21 22737 bp 43.73 1.00 89.05
anamox1_curated_scaffold_475
Order: Sphingobacteriales (50.44%)
113 130831 bp 40.85 1.00 89.27
anamox1_curated_scaffold_544
Phylum: Bacteroidetes (63.16%)
38 42013 bp 40.19 1.00 89.29
anamox1_curated_scaffold_1540
Order: Sphingobacteriales (61.7%)
47 54518 bp 41.54 1.00 89.35
anamox1_curated_scaffold_7008
Order: Sphingobacteriales (50%)
12 12293 bp 42.03 1.00 89.37
anamox1_curated_scaffold_17932
Phylum: Bacteroidetes (88.89%)
9 8897 bp 42.99 1.00 89.73
anamox1_curated_scaffold_246
Order: Sphingobacteriales (63.56%)
118 137418 bp 42.14 1.00 89.74
anamox1_curated_scaffold_1205
Phylum: Bacteroidetes (79.31%)
29 37535 bp 42.16 1.00 89.82
anamox1_curated_scaffold_275
Order: Sphingobacteriales (51.33%)
113 123787 bp 41.51 1.00 89.85
anamox1_curated_scaffold_287
Order: Sphingobacteriales (75.47%)
53 64617 bp 42.08 1.00 89.86
anamox1_curated_scaffold_1079
Order: Sphingobacteriales (62.96%)
27 26762 bp 42.68 1.00 89.88
anamox1_curated_scaffold_2804
Order: Sphingobacteriales (86.67%)
15 12219 bp 40.50 1.00 89.93
anamox1_curated_scaffold_1296
Phylum: Bacteroidetes (66.67%)
18 22228 bp 42.29 1.00 89.97
anamox1_curated_scaffold_367
Order: Sphingobacteriales (59.26%)
81 82933 bp 42.00 1.00 90.02
anamox1_curated_scaffold_303
Order: Sphingobacteriales (75.64%)
78 93284 bp 42.42 1.00 90.12
anamox1_curated_scaffold_281
Order: Sphingobacteriales (69.15%)
94 100540 bp 41.82 1.00 90.13
anamox1_curated_scaffold_1560
Order: Sphingobacteriales (71.43%)
14 19286 bp 40.76 1.00 90.13
anamox1_curated_scaffold_792
Order: Sphingobacteriales (60%)
30 33414 bp 41.53 1.00 90.32
anamox1_curated_scaffold_3822
Order: Sphingobacteriales (66.67%)
9 15118 bp 43.72 1.00 90.41
anamox1_curated_scaffold_652
Phylum: Bacteroidetes (87.88%)
33 37498 bp 42.18 1.00 90.43
Displaying items 1-50 of 95 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.