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ACD28_25

Alias: ACD28_20444.84273.13

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD28_25_1
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(242..763)
DNA (522bp) protein (174aa)
hypothetical protein
seg (db=Seg db_id=seg from=9 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
DUF192 (db=HMMPfam db_id=PF02643 from=56 to=169 evalue=1.9e-31 interpro_id=IPR003795 interpro_description=Protein of unknown function DUF192)
ACD28_25_2
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(767..1603)
DNA (837bp) protein (279aa)
trkA1; TrkA (EC:2.2.1.1)
seg (db=Seg db_id=seg from=153 to=163)
no description (db=Gene3D db_id=G3DSA:3.40.50.970 from=10 to=274 evalue=2.3e-34)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=12 to=274 evalue=2.1e-32)
ACD28_25_3
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(1557..2087)
DNA (531bp) protein (177aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
hypothetical protein BACCOPRO_00191 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197B0C7 (db=UNIREF evalue=7.0e-26 bit_score=119.0 identity=44.94 coverage=84.180790960452)
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK (db=superfamily db_id=SSF55083 from=1 to=170 evalue=8.8e-40 interpro_id=IPR000550 interpro_description=7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO=Molecular Function: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity (GO:0003848), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
no description (db=Gene3D db_id=G3DSA:3.30.70.560 from=2 to=168 evalue=2.6e-32 interpro_id=IPR000550 interpro_description=7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO=Molecular Function: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity (GO:0003848), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
ACD28_25_4
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

2153..3541
DNA (1389bp) protein (463aa)
radical SAM domain-containing protein
seg (db=Seg db_id=seg from=93 to=104)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=177 to=383 evalue=5.7e-39)
RADICAL SAM PROTEINS (db=HMMPanther db_id=PTHR11918 from=23 to=374 evalue=1.4e-28 interpro_id=IPR005839 interpro_description=Methylthiotransferase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: RNA modification (GO:0009451), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539))
ACD28_25_5
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

3538..4215
DNA (678bp) protein (226aa)
Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AA53_9CLOT (db=UNIREF evalue=5.0e-08 bit_score=61.6 identity=27.32 coverage=74.7787610619469)
CoaE (db=HMMPfam db_id=PF01121 from=6 to=174 evalue=8.3e-16 interpro_id=IPR001977 interpro_description=Dephospho-CoA kinase GO=Molecular Function: dephospho-CoA kinase activity (GO:0004140), Molecular Function: ATP binding (GO:0005524), Biological Process: coenzyme A biosynthetic process (GO:0015937))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=2 to=174 evalue=7.5e-14)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=5 to=219 evalue=4.0e-12)
Coenzyme A Jill Banfield (11/15/12)
ACD28_25_6
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

4205..6118
DNA (1914bp) protein (638aa)
putative Fe-S oxidoreductase
Radical SAM domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IBX9_ACIB4 (db=UNIREF evalue=7.0e-30 bit_score=135.0 identity=39.11 coverage=27.742946708464)
seg (db=Seg db_id=seg from=213 to=225)
seg (db=Seg db_id=seg from=410 to=426)
ACD28_25_7
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

6123..6812
DNA (690bp) protein (230aa)
type 11 methyltransferase
seg (db=Seg db_id=seg from=205 to=219)
coiled-coil (db=Coil db_id=coil from=77 to=98 evalue=NA)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=21 to=201 evalue=4.6e-29)
ACD28_25_8
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

6863..8329
DNA (1467bp) protein (489aa)
seg (db=Seg db_id=seg from=465 to=484)
seg (db=Seg db_id=seg from=408 to=425)
seg (db=Seg db_id=seg from=89 to=102)
coiled-coil (db=Coil db_id=coil from=398 to=468 evalue=NA)
ACD28_25_9

Not on your lists

8339..9364
DNA (1026bp) protein (342aa)
cyanophycin synthetase
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=67 to=327 evalue=6.2e-31)
CPSase_L_D2 (db=HMMPfam db_id=PF02786 from=66 to=154 evalue=1.9e-05 interpro_id=IPR005479 interpro_description=Carbamoyl phosphate synthetase, large subunit, ATP-binding GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: ATP binding (GO:0005524), Biological Process: metabolic process (GO:0008152))
ATP_GRASP (db=ProfileScan db_id=PS50975 from=71 to=328 evalue=27.764 interpro_id=IPR011761 interpro_description=ATP-grasp fold GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: ATP binding (GO:0005524))
ACD28_25_10

Not on your lists

comp(9331..10545)
DNA (1215bp) protein (405aa)
CinA (db=HMMPfam db_id=PF02464 from=210 to=307 evalue=1.6e-14 interpro_id=IPR008136 interpro_description=CinA, C-terminal)
CinA-like (db=superfamily db_id=SSF142433 from=198 to=306 evalue=5.1e-13)
Uncharacterized protein {ECO:0000313|EMBL:EKD93617.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
competence-damage inducible regulator Jill Banfield (11/15/12)
ACD28_25_11

Not on your lists

10676..11506
DNA (831bp) protein (277aa)
hypothetical protein
seg (db=Seg db_id=seg from=80 to=91)
transmembrane_regions (db=TMHMM db_id=tmhmm from=60 to=82)
seg (db=Seg db_id=seg from=216 to=225)
ACD28_25_12
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(11503..12708)
DNA (1206bp) protein (402aa)
thiamine biosynthesis/tRNA modification protein thii
seg (db=Seg db_id=seg from=182 to=195)
seg (db=Seg db_id=seg from=272 to=288)
seg (db=Seg db_id=seg from=374 to=384)
ACD28_25_13

Not on your lists

12760..13203
DNA (444bp) protein (148aa)
FKBP-type peptidyl-prolyl cis-trans isomerase
FK506 BINDING PROTEIN (db=HMMPanther db_id=PTHR10516 from=46 to=146 evalue=3.9e-52 interpro_id=IPR001179 interpro_description=Peptidyl-prolyl cis-trans isomerase, FKBP-type GO=Biological Process: protein folding (GO:0006457))
FK506-BINDING PROTEIN 1 (db=HMMPanther db_id=PTHR10516:SF29 from=46 to=146 evalue=3.9e-52)
FKBP-like (db=superfamily db_id=SSF54534 from=35 to=147 evalue=5.7e-42)
ACD28_25_14
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

13351..14190
DNA (840bp) protein (280aa)
13351..14190 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_15
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(14206..14763)
DNA (558bp) protein (186aa)
thioredoxin-like protein
Thioredoxin-like (db=superfamily db_id=SSF52833 from=6 to=185 evalue=2.2e-42 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
AhpC-TSA (db=HMMPfam db_id=PF00578 from=14 to=137 evalue=6.2e-21 interpro_id=IPR000866 interpro_description=Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen GO=Molecular Function: antioxidant activity (GO:0016209), Molecular Function: oxidoreductase activity (GO:0016491))
no description (db=Gene3D db_id=G3DSA:3.40.30.10 from=12 to=138 evalue=1.5e-19 interpro_id=IPR012335 interpro_description=Thioredoxin fold)
ACD28_25_16
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(14778..15515)
DNA (738bp) protein (246aa)
14778..15515 - (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_17
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(15599..16153)
DNA (555bp) protein (185aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=6 to=27 evalue=NA)
CYTH-like phosphatases (db=superfamily db_id=SSF55154 from=2 to=170 evalue=1.9e-22 interpro_id=IPR004206 interpro_description=mRNA capping enzyme, beta subunit GO=Molecular Function: polynucleotide 5'-phosphatase activity (GO:0004651), Molecular Function: protein binding (GO:0005515), Biological Process: mRNA capping (GO:0006370), Cellular Component: mRNA cap methyltransferase complex (GO:0031533))
no description (db=Gene3D db_id=G3DSA:2.40.320.10 from=3 to=178 evalue=2.3e-15)
ACD28_25_18

Not on your lists

16283..16576
DNA (294bp) protein (98aa)
16283..16576 + (rbs_motif=TAA rbs_spacer=10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD93625.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_25_19
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(16584..17030)
DNA (447bp) protein (149aa)
hypothetical protein
queuosine_QueD: queuosine biosynthesis (db=HMMTigr db_id=TIGR03367 from=2 to=91 evalue=1.5e-42)
Tetrahydrobiopterin biosynthesis enzymes-like (db=superfamily db_id=SSF55620 from=1 to=147 evalue=1.6e-35)
no description (db=Gene3D db_id=G3DSA:3.30.479.10 from=3 to=148 evalue=1.2e-29)
ACD28_25_20
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(17113..17964)
DNA (852bp) protein (284aa)
dihydropteroate synthase (EC:2.5.1.15)
DHPS_1 (db=PatternScan db_id=PS00792 from=19 to=34 evalue=0.0 interpro_id=IPR000489 interpro_description=Pterin-binding GO=Biological Process: pteridine and derivative metabolic process (GO:0042558))
DHPS_2 (db=PatternScan db_id=PS00793 from=53 to=66 evalue=0.0 interpro_id=IPR000489 interpro_description=Pterin-binding GO=Biological Process: pteridine and derivative metabolic process (GO:0042558))
DHPS: dihydropteroate synthase (db=HMMTigr db_id=TIGR01496 from=18 to=280 evalue=6.7e-114 interpro_id=IPR006390 interpro_description=Dihydropteroate synthase GO=Molecular Function: dihydropteroate synthase activity (GO:0004156), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
ACD28_25_21

Not on your lists

comp(17977..18792)
DNA (816bp) protein (272aa)
branched-chain amino acid aminotransferase
seg (db=Seg db_id=seg from=62 to=70)
seg (db=Seg db_id=seg from=148 to=161)
D-aminoacid aminotransferase-like PLP-dependent enzymes (db=superfamily db_id=SSF56752 from=2 to=271 evalue=2.5e-72 interpro_id=IPR001544 interpro_description=Aminotransferase, class IV GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD28_25_22
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(18807..19292)
DNA (486bp) protein (162aa)
phosphoribosylaminoimidazole carboxylase catalytic subunit PurE
seg (db=Seg db_id=seg from=59 to=71)
purE: phosphoribosylaminoimidazole carboxyla (db=HMMTigr db_id=TIGR01162 from=7 to=151 evalue=3.7e-89 interpro_id=IPR000031 interpro_description=1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase GO=Molecular Function: phosphoribosylaminoimidazole carboxylase activity (GO:0004638), Biological Process: 'de novo' IMP biosynthetic process (GO:0006189))
PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE CATALYTIC SUBUNIT (db=HMMPanther db_id=PTHR23046 from=1 to=160 evalue=1.4e-68 interpro_id=IPR000031 interpro_description=1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase GO=Molecular Function: phosphoribosylaminoimidazole carboxylase activity (GO:0004638), Biological Process: 'de novo' IMP biosynthetic process (GO:0006189))
ACD28_25_23
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(19387..20529)
DNA (1143bp) protein (381aa)
19387..20529 - (rbs_motif=TAA rbs_spacer=13bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_24
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(20548..21771)
DNA (1224bp) protein (408aa)
anthranilate synthase (EC:4.1.3.27)
seg (db=Seg db_id=seg from=230 to=240)
AMINOBENZOATE/ANTHRANILATE SYNTHASE (db=HMMPanther db_id=PTHR11236 from=129 to=407 evalue=3.7e-114 interpro_id=IPR005801 interpro_description=ADC synthase GO=Biological Process: biosynthetic process (GO:0009058))
ADC synthase (db=superfamily db_id=SSF56322 from=19 to=399 evalue=1.0e-110 interpro_id=IPR005801 interpro_description=ADC synthase GO=Biological Process: biosynthetic process (GO:0009058))
divergent annotations Jill Banfield (11/15/12)
ACD28_25_25
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(21777..22694)
DNA (918bp) protein (306aa)
seg (db=Seg db_id=seg from=135 to=146)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_26
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(22809..23270)
DNA (462bp) protein (154aa)
nucleoside-diphosphate kinase (EC:2.7.4.6)
no description (db=HMMSmart db_id=SM00562 from=1 to=138 evalue=4.8e-62 interpro_id=IPR001564 interpro_description=Nucleoside diphosphate kinase, core GO=Molecular Function: nucleoside diphosphate kinase activity (GO:0004550), Molecular Function: ATP binding (GO:0005524), Biological Process: GTP biosynthetic process (GO:0006183), Biological Process: UTP biosynthetic process (GO:0006228), Biological Process: CTP biosynthetic process (GO:0006241))
Nucleoside diphosphate kinase, NDK (db=superfamily db_id=SSF54919 from=1 to=149 evalue=4.2e-49 interpro_id=IPR001564 interpro_description=Nucleoside diphosphate kinase, core GO=Molecular Function: nucleoside diphosphate kinase activity (GO:0004550), Molecular Function: ATP binding (GO:0005524), Biological Process: GTP biosynthetic process (GO:0006183), Biological Process: UTP biosynthetic process (GO:0006228), Biological Process: CTP biosynthetic process (GO:0006241))
no description (db=Gene3D db_id=G3DSA:3.30.70.141 from=1 to=151 evalue=2.0e-48 interpro_id=IPR001564 interpro_description=Nucleoside diphosphate kinase, core GO=Molecular Function: nucleoside diphosphate kinase activity (GO:0004550), Molecular Function: ATP binding (GO:0005524), Biological Process: GTP biosynthetic process (GO:0006183), Biological Process: UTP biosynthetic process (GO:0006228), Biological Process: CTP biosynthetic process (GO:0006241))
ACD28_25_27
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

23367..23654
DNA (288bp) protein (96aa)
23367..23654 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_28
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(23668..24012)
DNA (345bp) protein (115aa)
seg (db=Seg db_id=seg from=95 to=106)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=76)
transmembrane_regions (db=TMHMM db_id=tmhmm from=91 to=113)
ACD28_25_29
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(23993..24367)
DNA (375bp) protein (125aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=98 to=120)
transmembrane_regions (db=TMHMM db_id=tmhmm from=63 to=85)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_30
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(24364..25197)
DNA (834bp) protein (278aa)
frdB; Fumarate reductase (anaerobic), Fe-S subunit (EC:1.3.99.1)
seg (db=Seg db_id=seg from=266 to=277)
2FE2S_FER_1 (db=PatternScan db_id=PS00197 from=84 to=92 evalue=0.0 interpro_id=IPR006058 interpro_description=2Fe-2S ferredoxin, iron-sulphur binding site GO=Molecular Function: electron carrier activity (GO:0009055))
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=176 to=187 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
Displaying items 1-30 of 77 in total

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