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ACD28_25

Alias: ACD28_20444.84273.13

Search features with annotation key words

Displaying items 31-60 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD28_25_31
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(25172..25549)
DNA (378bp) protein (126aa)
25172..25549 - (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_32
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(25568..25987)
DNA (420bp) protein (140aa)
25568..25987 - (rbs_motif=TAA rbs_spacer=13bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_33
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

26108..27049
DNA (942bp) protein (314aa)
seg (db=Seg db_id=seg from=226 to=241)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_34

Not on your lists

comp(27289..28989)
DNA (1701bp) protein (567aa)
frdA; fumarate reductase flavoprotein subunit frdA
frdA; fumarate reductase flavoprotein subunit frdA
Fumarate reductase flavoprotein subunit n=19 Tax=Mycobacterium tuberculosis complex RepID=FRDA_MYCBO (db=UNIREF evalue=1.0e-168 bit_score=597.0 identity=55.48 coverage=95.0617283950617)
seg (db=Seg db_id=seg from=405 to=416)
ACD28_25_35
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(29011..29523)
DNA (513bp) protein (171aa)
29011..29523 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_36
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(29562..34415)
DNA (4854bp) protein (1618aa)
seg (db=Seg db_id=seg from=307 to=330)
seg (db=Seg db_id=seg from=358 to=371)
seg (db=Seg db_id=seg from=106 to=118)
seg (db=Seg db_id=seg from=444 to=457)
ACD28_25_37
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

34620..34889
DNA (270bp) protein (90aa)
34620..34889 + (rbs_motif=TAA rbs_spacer=9bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_38
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

34873..35214
DNA (342bp) protein (114aa)
Transcriptional modulator of MazE/toxin, MazF n=1 Tax=Pelodictyon phaeoclathratiforme BU-1 RepID=B4SB26_PELPB (db=UNIREF evalue=5.0e-20 bit_score=99.8 identity=47.66 coverage=91.2280701754386)
transcriptional modulator of MazE/toxin MazF
Cell growth inhibitor/plasmid maintenance toxic component (db=superfamily db_id=SSF50118 from=3 to=111 evalue=2.1e-23 interpro_id=IPR011067 interpro_description=Plasmid maintenance toxin/Cell growth inhibitor)
no description (db=Gene3D db_id=G3DSA:2.30.30.110 from=5 to=111 evalue=1.5e-21 interpro_id=IPR011067 interpro_description=Plasmid maintenance toxin/Cell growth inhibitor)
ACD28_25_39

Not on your lists

comp(35233..37104)
DNA (1872bp) protein (624aa)
seg (db=Seg db_id=seg from=154 to=176)
Uncharacterized protein {ECO:0000313|EMBL:EKD93607.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_25_40
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(37399..38121)
DNA (723bp) protein (241aa)
seg (db=Seg db_id=seg from=23 to=36)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_41
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(38441..39706)
DNA (1266bp) protein (422aa)
peptidase M16 domain-containing protein
peptidase M16 domain-containing protein
Peptidase M16 domain protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0E9_HERA2 (db=UNIREF evalue=3.0e-81 bit_score=306.0 identity=40.43 coverage=98.8151658767773)
seg (db=Seg db_id=seg from=193 to=204)
ACD28_25_42

Not on your lists

39863..42415
DNA (2553bp) protein (851aa)
hypothetical protein
hypothetical protein
Copper amine oxidase-like protein n=3 Tax=Clostridium thermocellum RepID=A3DH87_CLOTH (db=UNIREF evalue=2.0e-131 bit_score=474.0 identity=42.29 coverage=72.2679200940071)
seg (db=Seg db_id=seg from=4 to=18)
ACD28_25_43

Not on your lists

42552..44951
DNA (2400bp) protein (800aa)
Penicillin-binding protein, transpeptidase protein
seg (db=Seg db_id=seg from=28 to=40)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
seg (db=Seg db_id=seg from=146 to=183)
ACD28_25_44
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(44964..45359)
DNA (396bp) protein (132aa)
44964..45359 - (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_45

Not on your lists

46365..46658
DNA (294bp) protein (98aa)
membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
UPF0118 (db=HMMPfam db_id=PF01594 from=2 to=87 evalue=9.0e-16 interpro_id=IPR002549 interpro_description=Uncharacterised protein family UPF0118)
ACD28_25_46
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

46743..46952
DNA (210bp) protein (70aa)
46743..46952 + (rbs_motif=TAA rbs_spacer=14bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_47
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(46997..47752)
DNA (756bp) protein (252aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=227 to=249)
transmembrane_regions (db=TMHMM db_id=tmhmm from=184 to=206)
transmembrane_regions (db=TMHMM db_id=tmhmm from=147 to=169)
ACD28_25_48
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

47940..48140
DNA (201bp) protein (67aa)
seg (db=Seg db_id=seg from=14 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_49
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(48150..48779)
DNA (630bp) protein (210aa)
seg (db=Seg db_id=seg from=192 to=209)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_50
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

48970..49539
DNA (570bp) protein (190aa)
ECF subfamily RNA polymerase sigma-24 subunit
coiled-coil (db=Coil db_id=coil from=100 to=121 evalue=NA)
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=18 to=184 evalue=2.9e-34 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=3 to=111 evalue=1.3e-16 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD28_25_51
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

49600..55134
DNA (5535bp) protein (1845aa)
alpha-2-macroglobulin
alpha-2-macroglobulin
Conserved domain protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67KI3_SYMTH (db=UNIREF evalue=2.0e-96 bit_score=358.0 identity=28.07 coverage=53.0081300813008)
seg (db=Seg db_id=seg from=1614 to=1624)
ACD28_25_52

Not on your lists

55192..55407
DNA (216bp) protein (72aa)
55192..55407 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD93598.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_25_53
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

55622..55831
DNA (210bp) protein (70aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=3 to=14)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_54
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

55865..57313
DNA (1449bp) protein (483aa)
seg (db=Seg db_id=seg from=452 to=469)
coiled-coil (db=Coil db_id=coil from=66 to=87 evalue=NA)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_55
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

57326..58165
DNA (840bp) protein (280aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=174 to=193)
transmembrane_regions (db=TMHMM db_id=tmhmm from=206 to=228)
transmembrane_regions (db=TMHMM db_id=tmhmm from=233 to=255)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
ACD28_25_56
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(58278..58583)
DNA (306bp) protein (102aa)
coiled-coil (db=Coil db_id=coil from=69 to=90 evalue=NA)
seg (db=Seg db_id=seg from=66 to=101)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_57

Not on your lists

comp(58528..61164)
DNA (2637bp) protein (879aa)
hypothetical protein
seg (db=Seg db_id=seg from=858 to=874)
seg (db=Seg db_id=seg from=8 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD28_25_58
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

61400..61726
DNA (327bp) protein (109aa)
61400..61726 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_59
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(61866..62366)
DNA (501bp) protein (167aa)
61866..62366 - (rbs_motif=TAA rbs_spacer=6bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_25_60

Not on your lists

comp(62476..62724)
DNA (249bp) protein (83aa)
hypothetical protein
GIY-YIG (db=HMMPfam db_id=PF01541 from=5 to=69 evalue=6.5e-11 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=2 to=79 evalue=2.1e-09 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
hypothetical protein; K07461 putative endonuclease alias=ACD28_C00025G00060,ACD28_20444.84273.13G0060,ACD28_20444.84273.13_60 id=31027 tax=ACD28 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes organism_group=PER organism_desc=PER
Displaying items 31-60 of 77 in total

View Taxonomy