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13_1_20cm_4_scaffold_5566

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_5566_1
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

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2..979
DNA (978bp) protein (326aa)
succinyl-CoA:3-ketoacid-coenzyme A transferase 1; K01027 3-oxoacid CoA-transferase [EC:2.8.3.5] Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
succinyl-CoA:3-ketoacid-coenzyme A transferase 1 (EC:2.8.3.5)
Acetate CoA-transferase YdiF n=5 Tax=Mycobacterium avium complex (MAC) RepID=H8IVB2_MYCIA
13_1_20cm_4_scaffold_5566_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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986..1894
DNA (909bp) protein (303aa)
short chain fatty acid transporter; K02106 short-chain fatty acids transporter Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Short-chain fatty acid transporter id=3182237 bin=GWA1_Deltaproteobacteria_52_35 species=unknown genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
short chain fatty acid transporter
13_1_20cm_4_scaffold_5566_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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1972..2265
DNA (294bp) protein (98aa)
short chain fatty acid transporter; K02106 short-chain fatty acids transporter Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Short-chain fatty acid transporter id=3845935 bin=GWB1_Deltaproteobacteria_rel_55_8 species=unknown genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
short chain fatty acid transporter
13_1_20cm_4_scaffold_5566_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(2287..4143)
DNA (1857bp) protein (619aa)
Methylmalonyl-CoA mutase, large subunit {ECO:0000313|EMBL:EDY15898.1}; EC=5.4.99.2 {ECO:0000313|EMBL:EDY15898.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" so
Methylmalonyl-CoA mutase, large subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCE9_9BACT
mcm; methylmalonyl-CoA mutase
13_1_20cm_4_scaffold_5566_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(4246..5367)
DNA (1122bp) protein (374aa)
methylmalonyl-CoA mutase (EC:5.4.99.2)
Cobalamin B12-binding domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCE8_9BACT rbh
Cobalamin B12-binding domain protein {ECO:0000313|EMBL:EDY15897.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_1_20cm_4_scaffold_5566_6

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5500..6255
DNA (756bp) protein (252aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCE7_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48386.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
3-oxoacyl-(acyl-carrier-protein) reductase
13_1_20cm_4_scaffold_5566_7
RLO_PLX_64_10, Bacteria

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comp(6421..6900)
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMB7_9BACT
cupin Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
cupin
13_1_20cm_4_scaffold_5566_8
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

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comp(6937..7995)
DNA (1059bp) protein (353aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=583355 species="Bacteria; Verrucomicrobia; Op
DNA polymerase IV n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EJC6_CORAD
DNA-directed DNA polymerase
13_1_20cm_4_scaffold_5566_9
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8072..8308)
DNA (237bp) protein (79aa)
multidrug transporter MatE n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00037DA6D2
Multidrug transporter MatE {ECO:0000313|EMBL:KJC52869.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium
MATE efflux family protein
Displaying 9 items

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