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13_1_40cm_scaffold_3917

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Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_3917_trna_1
unknown

Not on your lists

comp(12..83)
DNA (72bp)
transferRNA
13_1_40cm_scaffold_3917_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(101..841)
DNA (741bp) protein (247aa)
rRNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] Tax=GWA2_Rokubacteria_73_35_curated
rRNA methyltransferase id=4675081 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA methyltransferase
13_1_40cm_scaffold_3917_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(868..2259)
DNA (1392bp) protein (464aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cysteine--tRNA ligase id=4675082 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cysS; cysteinyl-tRNA synthetase
13_1_40cm_scaffold_3917_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2256..2732)
DNA (477bp) protein (159aa)
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12); K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] Tax=GWA2_Rokubacteria_73_35_curated
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase id=4675083 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
IspF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
13_1_40cm_scaffold_3917_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2729..3424)
DNA (696bp) protein (232aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60); K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase id=4675084 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum ruminis genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
13_1_40cm_scaffold_3917_5
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(3399..3929)
DNA (531bp) protein (177aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein id=14625946 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Integral membrane protein
13_1_40cm_scaffold_3917_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3932..4321)
DNA (390bp) protein (130aa)
PilT protein domain protein id=4092311 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
PilT protein-like Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_scaffold_3917_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4318..5682)
DNA (1365bp) protein (455aa)
DNA repair protein RadA (EC:2.1.1.63)
radA; DNA repair protein RadA; K04485 DNA repair protein RadA/Sms Tax=GWA2_Rokubacteria_73_35_curated
DNA repair protein radA id=3836394 bin=GWF2_Methylomirabilis_70_14 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_3917_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5682..6905)
DNA (1224bp) protein (408aa)
Mce family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter substrate-binding protein id=14625944 bin=bin7_NC10_sister species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Mce family protein
13_1_40cm_scaffold_3917_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6898..7650)
DNA (753bp) protein (251aa)
ABC transporter ATPase; K02065 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter; K02065 putative ABC transport system ATP-binding protein id=14625943 bin=bin7_NC10_sister species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
ABC transporter
13_1_40cm_scaffold_3917_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7898..8665)
DNA (768bp) protein (256aa)
yrbE; toluene ABC transporter subunit membrane protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
yrbE; toluene ABC transporter subunit membrane protein id=14625942 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
yrbE; toluene ABC transporter subunit membrane protein
13_1_40cm_scaffold_3917_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8669..9175)
DNA (507bp) protein (169aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Conserved uncharacterized protein id=4831888 bin=GWC2_Methylomirabilis_70_24 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_3917_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9180..9812)
DNA (633bp) protein (211aa)
phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase; K11755 phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase [EC:3.6.1.31 3.5.4.19] Tax=RIFCSPLOWO2_02_FULL_
hisI; histidine biosynthesis bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC:3.5.4.19 3.6.1.31)
Histidine biosynthesis bifunctional protein hisIE id=4246274 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_3917_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(9809..10612)
DNA (804bp) protein (268aa)
hisF; imidazole glycerol phosphate synthase subunit HisF (EC:4.1.3.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hisF; imidazole glycerol phosphate synthase cyclase subunit (EC:4.1.3.-); K02500 cyclase [EC:4.1.3.-] id=14625939 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
imidazole glycerol phosphate synthase
13_1_40cm_scaffold_3917_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10606..11325)
DNA (720bp) protein (240aa)
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16); K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16)
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase id=14625938 bin=bin7_NC10_sister species=Acinetobacter nectaris genus=Acinetobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_3917_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11322..11948)
DNA (627bp) protein (209aa)
imidazole glycerol phosphate synthase subunit hisH; K02501 glutamine amidotransferase [EC:2.4.2.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hisH; imidazole glycerol phosphate synthase subunit HisH; K02501 glutamine amidotransferase [EC:2.4.2.-] id=14625937 bin=bin7_NC10_sister species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
imidazole glycerol phosphate synthase subunit hisH
13_1_40cm_scaffold_3917_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11945..12550)
DNA (606bp) protein (202aa)
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] id=14625936 bin=bin7_NC10_sister species=Geopsychrobacter electrodiphilus genus=Geopsychrobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
13_1_40cm_scaffold_3917_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12547..13866)
DNA (1320bp) protein (440aa)
hisD; histidinol dehydrogenase (EC:1.1.1.23) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Histidinol dehydrogenase id=4246279 bin=GWC2_Methylomirabilis_70_16 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hisD; histidinol dehydrogenase
13_1_40cm_scaffold_3917_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14058..15950)
DNA (1893bp) protein (631aa)
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase id=4831881 bin=GWC2_Methylomirabilis_70_24 species=Burkholderia rhizoxinica genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
UDP-N-acetylglucosamine 1-carboxyvinyltransferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_scaffold_3917_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15954..16847)
DNA (894bp) protein (298aa)
Modification methylase HemK (EC:2.1.1.72); K02493 release factor glutamine methyltransferase [EC:2.1.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Release factor glutamine methyltransferase id=4980434 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hemK; peptide chain release factor methyltransferase
13_1_40cm_scaffold_3917_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16844..17917)
DNA (1074bp) protein (358aa)
peptide chain release factor 1; K02835 peptide chain release factor 1 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptide chain release factor 1 id=4980433 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
prfA; peptide chain release factor 1
13_1_40cm_scaffold_3917_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(17956..18171)
DNA (216bp) protein (72aa)
LSU ribosomal protein L31P Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L31 id=4246284 bin=GWC2_Methylomirabilis_70_16 species=Faecalibacterium prausnitzii genus=Faecalibacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
LSU ribosomal protein L31P
13_1_40cm_scaffold_3917_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(18277..19605)
DNA (1329bp) protein (443aa)
rho; transcription termination factor Rho; K03628 transcription termination factor Rho Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
rho; transcription termination factor Rho id=14625929 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
transcription termination factor Rho
13_1_40cm_scaffold_3917_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19749..20825)
DNA (1077bp) protein (359aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] Tax=GWA2_Rokubacteria_73_35_curated
PpiC-type peptidyl-prolyl cis-trans isomerase id=4980430 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PpiC-type peptidyl-prolyl cis-trans isomerase
13_1_40cm_scaffold_3917_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20822..21748)
DNA (927bp) protein (309aa)
mfd; transcription-repair-coupling factor (TRCF) (ATP-dependent helicase mfd) (EC:3.6.1.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcription-repair coupling factor id=4980429 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcription-repair coupling factor
13_1_40cm_scaffold_3917_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21699..23933)
DNA (2235bp) protein (745aa)
mfd; transcription-repair-coupling factor (TRCF) (ATP-dependent helicase mfd) (EC:3.6.1.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
mfd; transcription-repair coupling factor (EC:3.6.1.-)
Transcription-repair coupling factor id=4980429 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_3917_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(23974..24582)
DNA (609bp) protein (203aa)
Redox-sensing transcriptional repressor rex id=4980428 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rex; redox-sensing transcriptional repressor rex Tax=GWA2_Rokubacteria_73_35_curated
rex; redox-sensing transcriptional repressor rex
13_1_40cm_scaffold_3917_27
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(24670..24999)
DNA (330bp) protein (110aa)
ATP synthase subunit C, membrane-bound, F0 sector; DCCD-binding (EC:3.6.3.14) Tax=GWC2_Rokubacteria_70_16_curated
ATP synthase subunit C, membrane-bound, F0 sector DCCD-binding (Modular protein) id=4246292 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ATP synthase f0 subcomplex c subunit
13_1_40cm_scaffold_3917_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25029..25796)
DNA (768bp) protein (256aa)
ATP synthase subunit A (EC:3.6.3.14) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ATP synthase subunit A (EC:3.6.3.14) id=14625924 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ATP synthase subunit A (EC:3.6.3.14)
13_1_40cm_scaffold_3917_29
unknown

Not on your lists

comp(25796..26164)
DNA (369bp) protein (123aa)

This feature has no annotations

Displaying items 1-30 of 41 in total

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