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SCN18_25_1_16_R2_B_scaffold_105

Search features with annotation key words

Displaying items 31-60 of 143 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R2_B_scaffold_105_31
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24975..25643)
DNA (669bp) protein (223aa)
Heme exporter protein B n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DFD1_BRAJP
Marine sediment metagenome DNA, contig: S03H2_L01581 {ECO:0000313|EMBL:GAH34862.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
heme transporter
SCN18_25_1_16_R2_B_scaffold_105_32
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25640..26242)
DNA (603bp) protein (201aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000255|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000255|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000255|HAMAP-Rule:MF_01707}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Cytochrome c biogenesis ATP-binding export protein CcmA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=CCMA_NITHX
cytochrome c biogenesis protein CcmA
SCN18_25_1_16_R2_B_scaffold_105_33
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26475..29192
DNA (2718bp) protein (906aa)
aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Aconitase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR48_NITHX
SCN18_25_1_16_R2_B_scaffold_105_34
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29344..30096
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR49_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61298.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_105_35
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30502..30873
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR50_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61297.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_105_36
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30935..31699)
DNA (765bp) protein (255aa)
Transcriptional regulator, GntR-family n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AWS0_AZOBR
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:AIB16173.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
SCN18_25_1_16_R2_B_scaffold_105_37
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31957..32529
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR42_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61305.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_105_38
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32560..33855
DNA (1296bp) protein (432aa)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H785_9BRAD
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase {ECO:0000313|EMBL:ERF80608.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
cysD; O-acetylhomoserine aminocarboxypropyltransferase
SCN18_25_1_16_R2_B_scaffold_105_39
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33859..34647
DNA (789bp) protein (263aa)
alpha/beta hydrolase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003816C34
Alpha/beta hydrolase {ECO:0000313|EMBL:KJC60795.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
putative hydolase
SCN18_25_1_16_R2_B_scaffold_105_40
SCNPILOT_SOLID2_TRIM150_Phage_6, SCNPILOT_SOLID2_TRIM150_Phage_6, SCNPILOT_SOLID2_TRIM150_Phage_6, SCNPILOT_SOLID2_TRIM150_Phage_6, SCNPILOT_SOLID2_TRIM150_Phage_6, Phage

Not on your lists

comp(34897..35133)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR41_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61306.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_105_41
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35302..36954)
DNA (1653bp) protein (551aa)
betA; choline dehydrogenase (EC:1.1.99.1)
choline dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002F0E005
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44736.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCN18_25_1_16_R2_B_scaffold_105_42
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37198..38430
DNA (1233bp) protein (411aa)
Acetyl-CoA acetyltransferase n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YQE6_9BRAD
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:EHR04778.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
acetyl-CoA acetyltransferase
SCN18_25_1_16_R2_B_scaffold_105_43
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38632..39855
DNA (1224bp) protein (408aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034BAC3D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL76298.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCN18_25_1_16_R2_B_scaffold_105_44
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39885..40673)
DNA (789bp) protein (263aa)
Glycerol-3-phosphate regulon repressor n=2 Tax=Bradyrhizobiaceae RepID=F7QKJ5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42529.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
glpR1; Cro/CI family transcriptional regulator -like protein
SCN18_25_1_16_R2_B_scaffold_105_45
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40783..41799
DNA (1017bp) protein (339aa)
ABC transporter ATP-binding protein n=1 Tax=Afipia birgiae RepID=UPI0002FB5231
SN-glycerol-3-phosphate transport ATP-binding protein {ECO:0000313|EMBL:EGP08365.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Glycerol-3-phosphate-transporting ATPase
SCN18_25_1_16_R2_B_scaffold_105_46
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41847..43124
DNA (1278bp) protein (426aa)
Glycerol-3-phosphate ABC transporter n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKJ7_9BRAD
Glycerol-3-phosphate ABC transporter {ECO:0000313|EMBL:EGP08366.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
extracellular solute-binding protein
SCN18_25_1_16_R2_B_scaffold_105_47
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43245..44096
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00030AD25A
Uncharacterized protein {ECO:0000313|EMBL:EKS42532.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
sugar ABC transporter permease
SCN18_25_1_16_R2_B_scaffold_105_48
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44093..44902
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PVY0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42533.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ABC transporter permease
SCN18_25_1_16_R2_B_scaffold_105_49
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44902..45741
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PNY2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42534.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
Metal-dependent hydrolase
SCN18_25_1_16_R2_B_scaffold_105_50
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45757..46674)
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002F63CE9
Uncharacterized protein {ECO:0000313|EMBL:KJC33608.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
LysR family transcriptional regulator
SCN18_25_1_16_R2_B_scaffold_105_51
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46780..47844
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002D3B898
LysR family transcriptional regulator {ECO:0000313|EMBL:KJC57546.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
rieske [2Fe-2S] domain-containing protein 5
SCN18_25_1_16_R2_B_scaffold_105_52
Salinisphaera shabanensis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48079..48471
DNA (393bp) protein (131aa)
Tautomerase protein n=1 Tax=Salinisphaera shabanensis E1L3A RepID=F7Q3Q2_9GAMM
Tautomerase protein {ECO:0000313|EMBL:ERJ18406.1}; TaxID=1033802 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera shabanensis E1L3A.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_105_trna_1
unknown

Not on your lists

comp(48533..48619)
DNA (87bp)
transferRNA Ser
SCN18_25_1_16_R2_B_scaffold_105_53
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49064..50758)
DNA (1695bp) protein (565aa)
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) PF4_NITHX">RepID=Q1QPF4_NITHX
methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor {ECO:0000313|EMBL:ABE61893.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_105_54
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51147..52259)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQU4_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61403.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_105_55
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


52591..53106
DNA (516bp) protein (172aa)
50S ribosomal protein L21 n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002FD68B1
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
rplU; 50S ribosomal protein L21
SCN18_25_1_16_R2_B_scaffold_105_56
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


53198..53470
DNA (273bp) protein (91aa)
50S ribosomal protein L27 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=RL27_NITHX
rpmA; 50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000255|HAMAP-Rule:MF_00539}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_105_57
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53602..54201
DNA (600bp) protein (200aa)
GCN5-related N-acetyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQU1_NITHX
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABE61406.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_105_58
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54244..55614)
DNA (1371bp) protein (457aa)
Arabinose efflux permease family protein n=1 Tax=Acidovorax sp. CF316 RepID=J1ERY9_9BURK
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17758.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
major facilitator superfamily permease
SCN18_25_1_16_R2_B_scaffold_105_59
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55644..56561)
DNA (918bp) protein (306aa)
DMT transporter permease n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036BDE47
Multidrug DMT transporter permease {ECO:0000313|EMBL:KJC55402.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
DMT family permease
Displaying items 31-60 of 143 in total

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