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berkeley_reactor_200306_planktonic_scaffold_158606

Search features with annotation key words

Displaying items 121-150 of 200 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_158606_120
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

143751..144239
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPI7_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB74506.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_158606_121
Erwinia typographi, Erwinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(144711..145229)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Enterobacter cloacae UCICRE 12 RepID=V3DTZ3_ENTCL
QacE {ECO:0000313|EMBL:KGT87026.1}; TaxID=371042 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia.;" source="Erwinia typographi.;"
berkeley_reactor_200306_planktonic_scaffold_158606_122
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(145236..146528)
DNA (1293bp) protein (431aa)
Integrase family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHN2_9BACT
Integrase family protein {ECO:0000313|EMBL:EEF60610.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
integrase
berkeley_reactor_200306_planktonic_scaffold_158606_trna_1
unknown

Not on your lists

146592..146676
DNA (85bp)
transferRNA Leu
berkeley_reactor_200306_planktonic_scaffold_158606_123
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(147339..147998)
DNA (660bp) protein (220aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEI2_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF61696.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_158606_124
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(148299..149063)
DNA (765bp) protein (255aa)
acetylhydrolase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003618AA7
G-D-S-L family lipolytic protein
Lipolytic protein G-D-S-L family {ECO:0000313|EMBL:ACT93899.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_planktonic_scaffold_158606_125
Akkermansia sp. CAG:344, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(149107..150036)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Akkermansia sp. CAG:344 RepID=R7DSY3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDD93153.1}; TaxID=1262691 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" source="Akkermansia sp. CAG:344.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_126
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(150083..152425)
DNA (2343bp) protein (781aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037C8DBC
Uncharacterized protein {ECO:0000313|EMBL:KGF81186.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
coagulation factor 5/8 type domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_158606_127
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(152505..155423)
DNA (2919bp) protein (973aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00037A4D7A
glycoside hydrolase family protein
Glycoside hydrolase family protein {ECO:0000313|EMBL:AIE83675.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
berkeley_reactor_200306_planktonic_scaffold_158606_128
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(155505..157943)
DNA (2439bp) protein (813aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. CF136 RepID=J2JP08_9FLAO
hypothetical protein
Tax=RBG_13_Planctomycetes_62_9_curated
berkeley_reactor_200306_planktonic_scaffold_158606_129
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(158035..160005)
DNA (1971bp) protein (657aa)
Alpha-glucosidase, putative n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZN46_OPITP
alpha-glucosidase
Alpha-glucosidase, putative {ECO:0000313|EMBL:ACB76497.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_158606_130
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(160082..163066)
DNA (2985bp) protein (995aa)
Glycoside hydrolase family 2 sugar binding protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QIV3_SPILD
Uncharacterized protein {ECO:0000313|EMBL:KIC94339.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_131
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(163120..165636)
DNA (2517bp) protein (839aa)
Alpha-L-fucosidase {ECO:0000313|EMBL:AEV98711.1}; EC=3.2.1.51 {ECO:0000313|EMBL:AEV98711.1};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Alpha-L-fucosidase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TKN7_NIAKG
alpha-L-fucosidase
berkeley_reactor_200306_planktonic_scaffold_158606_132
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(165679..168801)
DNA (3123bp) protein (1041aa)
Alpha-L-arabinofuranosidase-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIK2_9BACT
Alpha-L-arabinofuranosidase-like protein {ECO:0000313|EMBL:EEF60265.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
alpha-L-arabinofuranosidase
berkeley_reactor_200306_planktonic_scaffold_158606_133
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(169001..172225)
DNA (3225bp) protein (1075aa)
Cellulase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TKP0_NIAKG
Cellulase
Cellulase {ECO:0000313|EMBL:AIE86402.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
berkeley_reactor_200306_planktonic_scaffold_158606_134
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(172706..173542)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQF9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57884.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_135
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(173558..174379)
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00038292B3
Uncharacterized protein {ECO:0000313|EMBL:EEF63023.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_136
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(174535..177081)
DNA (2547bp) protein (849aa)
Immunoglobulin I-set domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZVP5_OPITP
immunoglobulin I-set domain-containing protein
Immunoglobulin I-set domain protein {ECO:0000313|EMBL:ACB74142.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_158606_137
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(177327..180341)
DNA (3015bp) protein (1005aa)
Histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XB09_9BACT
Histidine kinase {ECO:0000313|EMBL:EEF63194.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_138
Joostella marina, Joostella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

180482..182875
DNA (2394bp) protein (798aa)
Family 31 glycosyl hydrolase, alpha-glucosidase n=1 Tax=Joostella marina DSM 19592 RepID=I3C8M7_9FLAO
Family 31 glycosyl hydrolase, alpha-glucosidase {ECO:0000313|EMBL:EIJ39970.1}; Flags: Precursor;; TaxID=926559 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Joostella.;" source="Joostella marina DSM 19592.;"
glycoside hydrolase
berkeley_reactor_200306_planktonic_scaffold_158606_139
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

182845..184791
DNA (1947bp) protein (649aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2PXM9_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL32522.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_140
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

184974..186578
DNA (1605bp) protein (535aa)
Xylan 1,4-beta-xylosidase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TKP2_NIAKG
glycoside hydrolase
Glycoside hydrolase {ECO:0000313|EMBL:AKC82798.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_158606_141
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

186891..188441
DNA (1551bp) protein (517aa)
Carboxylic ester hydrolase; EC=3.1.1.-;; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
carboxylesterase n=1 Tax=Spirosoma panaciterrae RepID=UPI000377CBCE
type B carboxylesterase
berkeley_reactor_200306_planktonic_scaffold_158606_142
Streptomyces ipomoeae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

188819..190930
DNA (2112bp) protein (704aa)
beta-galactosidase n=1 Tax=Streptomyces acidiscabies RepID=UPI0002881F37
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EKX68608.1}; TaxID=698759 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ipomoeae 91-03.;"
glycosyl hydrolase
berkeley_reactor_200306_planktonic_scaffold_158606_143
unknown

Not on your lists

comp(191160..191402)
DNA (243bp) protein (81aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_144
unknown

Not on your lists

comp(191489..191761)
DNA (273bp) protein (91aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_145
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(191858..192940)
DNA (1083bp) protein (361aa)
pfkA2; protein PfkA2 (EC:2.7.1.11)
6-phosphofructokinase id=4803700 bin=GWA2_Elusimicrobia_69_24 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
Tax=RBG_16_Planctomycetes_64_10_curated
berkeley_reactor_200306_planktonic_scaffold_158606_146
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(192942..193673)
DNA (732bp) protein (244aa)
Rhodanese domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ40_9BACT
Rhodanese domain protein {ECO:0000313|EMBL:EEF60078.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_147
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(193846..195324)
DNA (1479bp) protein (493aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI0003639F5E
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:EIC28787.1}; TaxID=686340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium album BG8.;"
Fis family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_158606_148
unknown

Not on your lists

comp(195362..195952)
DNA (591bp) protein (197aa)

This feature has no annotations

Displaying items 121-150 of 200 in total

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