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berkeley_reactor_200306_planktonic_scaffold_161060

Search features with annotation key words

Displaying items 61-90 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_161060_60
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(74064..76286)
DNA (2223bp) protein (741aa)
Glycoside hydrolase family 16 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAN3_9BACT
Glycoside hydrolase family 16 {ECO:0000313|EMBL:EEF63068.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_161060_61
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(76392..77285)
DNA (894bp) protein (298aa)
Glucan endo-1,3-beta-D-glucosidase {ECO:0000313|EMBL:EEF63051.1}; EC=3.2.1.39 {ECO:0000313|EMBL:EEF63051.1};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Glucan endo-1,3-beta-D-glucosidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAL6_9BACT
glycoside hydrolase family protein
berkeley_reactor_200306_planktonic_scaffold_161060_62
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(77282..80719)
DNA (3438bp) protein (1146aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAM2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF63057.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_161060_63
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(80741..82102)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAM1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF63056.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_161060_64
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(82107..83666)
DNA (1560bp) protein (520aa)
Sugar transporter {ECO:0000313|EMBL:EEF63055.1}; EC=1.3.1.74 {ECO:0000313|EMBL:EEF63055.1};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Sugar transporter n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAM0_9BACT
MFS transporter
berkeley_reactor_200306_planktonic_scaffold_161060_65
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(83767..84531)
DNA (765bp) protein (255aa)
Type II secretory pathway pseudopilin PulG-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAL9_9BACT
Type II secretory pathway pseudopilin PulG-like protein {ECO:0000313|EMBL:EEF63054.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
N-terminal cleavage protein
berkeley_reactor_200306_planktonic_scaffold_161060_66
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(84594..86672)
DNA (2079bp) protein (693aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAL8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF63053.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_161060_67
unknown

Not on your lists

comp(87145..87843)
DNA (699bp) protein (233aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_161060_68
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(87979..88611)
DNA (633bp) protein (211aa)
Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JPJ0_9BACT
Sigma-70, region 4 family {ECO:0000313|EMBL:EDY84287.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_161060_69
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(88608..90707)
DNA (2100bp) protein (700aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAK7_9BACT
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:EEF63042.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
integral membrane sensor signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_161060_70
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

90892..92418
DNA (1527bp) protein (509aa)
Mg chelatase, subunit ChlI n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR16_9BACT
Mg chelatase, subunit ChlI {ECO:0000313|EMBL:EEF57712.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Mg chelatase subunit ChlI
berkeley_reactor_200306_planktonic_scaffold_161060_71
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92454..93623)
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Methylococcus capsulatus RepID=UPI0002F6BE9C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAU93276.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
berkeley_reactor_200306_planktonic_scaffold_161060_72
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(93708..94994)
DNA (1287bp) protein (429aa)
Twitching motility protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D773_9BACT
Twitching motility protein {ECO:0000313|EMBL:EDY17724.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
pilT3; twitchung motility proteIN PilT3
berkeley_reactor_200306_planktonic_scaffold_161060_73
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95235..95771)
DNA (537bp) protein (179aa)
Polyketide cyclase/dehydrase n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5C0U6_9GAMM
Polyketide cyclase/dehydrase {ECO:0000313|EMBL:ESS72072.1}; TaxID=1116472 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobulus morosus KoM1.;"
polyketide cyclase/dehydrase
berkeley_reactor_200306_planktonic_scaffold_161060_74
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(95801..96187)
DNA (387bp) protein (129aa)
Putative membrane spanning transport protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZK6_9BACT
Putative membrane spanning transport protein {ECO:0000313|EMBL:EDY20170.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
DoxX family protein
berkeley_reactor_200306_planktonic_scaffold_161060_75
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(96225..96521)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQC9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57953.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_161060_76
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(96624..97790)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQC8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57952.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_161060_77
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(97835..98281)
DNA (447bp) protein (149aa)
activator of HSP90 ATPase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B678E6
Activator of HSP90 ATPase {ECO:0000313|EMBL:KFN43046.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_161060_78
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(98321..98845)
DNA (525bp) protein (175aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQC5_9BACT
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:EEF57949.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
activator of Hsp90 ATPase 1 family protein
berkeley_reactor_200306_planktonic_scaffold_161060_79
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(98885..99325)
DNA (441bp) protein (147aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Methylosarcina fibrata RepID=UPI000379B215
3-demethylubiquinone-9 3-methyltransferase
Tax=RBG_16_Betaproteobacteria_66_20_curated
berkeley_reactor_200306_planktonic_scaffold_161060_80
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(99378..99788)
DNA (411bp) protein (137aa)
YCII-related protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQD2_9BACT
YCII-related protein {ECO:0000313|EMBL:EEF57956.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DGPFAETKE family protein
berkeley_reactor_200306_planktonic_scaffold_161060_81
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(99825..100244)
DNA (420bp) protein (140aa)
DGPFAETKE family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC07_9BACT
DGPFAETKE family protein {ECO:0000313|EMBL:EDY16054.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_161060_82
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(100543..102033)
DNA (1491bp) protein (497aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00037096EB
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:EIC28787.1}; TaxID=686340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium album BG8.;"
Fis family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_161060_83
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(102062..103618)
DNA (1557bp) protein (519aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000362C568
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:CDM65472.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
EmrB/QacA subfamily drug resistance transporter
berkeley_reactor_200306_planktonic_scaffold_161060_84
Desulfovibrio sp. X2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(103645..104820)
DNA (1176bp) protein (392aa)
Secretion protein HlyD family protein n=1 Tax=Desulfovibrio sp. X2 RepID=S7UTI9_9DELT
Secretion protein HlyD family protein {ECO:0000313|EMBL:EPR37359.1}; TaxID=941449 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. X2.;"
secretion protein HlyD family protein
berkeley_reactor_200306_planktonic_scaffold_161060_85
RIFOXYC12_FULL_Lentisphaerae_60_16_curated, Lentisphaerae, Bacteria

Not on your lists

105004..106674
DNA (1671bp) protein (557aa)
Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF66_9BACT
transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains
Tax=RIFOXYC12_FULL_Lentisphaerae_60_16_curated
berkeley_reactor_200306_planktonic_scaffold_161060_86
Macrococcus caseolyticus, Macrococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(106696..107373)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00036F4593
potassium transporter NAD-binding component
Potassium transport system NAD-binding component {ECO:0000313|EMBL:BAH17412.1}; TaxID=458233 species="Bacteria; Firmicutes; Bacilli; Bacillales; Macrococcus.;" source="Macrococcus caseolyticus (strain JCSC5402).;"
berkeley_reactor_200306_planktonic_scaffold_161060_87
Desulfatibacillum alkenivorans, Desulfatibacillum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(107388..108800)
DNA (1413bp) protein (471aa)
Potassium uptake protein, TrkH family {ECO:0000313|EMBL:ACL06679.1}; EC=3.6.3.14 {ECO:0000313|EMBL:ACL06679.1};; TaxID=439235 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum.;" source="Desulfatibacillum alkenivorans (strain AK-01).;"
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00036A3DC0
TrkH family potassium uptake protein
berkeley_reactor_200306_planktonic_scaffold_161060_88
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(109063..110970)
DNA (1908bp) protein (636aa)
FmtA-like protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TR39_METAC
FmtA-like protein
FmtA-like protein {ECO:0000313|EMBL:AAM04761.1}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /; C2A).;"
berkeley_reactor_200306_planktonic_scaffold_161060_89
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

comp(111100..111519)
DNA (420bp) protein (140aa)
peptide chain release factor id=24421214 bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
peptide chain release factor
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
Displaying items 61-90 of 92 in total

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