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berkeley_reactor_200306_planktonic_scaffold_190120

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Displaying items 31-60 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_190120_31
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

39585..40274
DNA (690bp) protein (230aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZWR4_OPITP
cupin
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_190120_32
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

40300..41109
DNA (810bp) protein (270aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZWR5_OPITP
hypothetical protein
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:ACB74192.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_190120_33
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41148..42692)
DNA (1545bp) protein (515aa)
Peptidase S10 serine carboxypeptidase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1U0_9BACT
peptidase S10 serine carboxypeptidase
Tax=GWC2_Geobacteraceae_58_44_curated
berkeley_reactor_200306_planktonic_scaffold_190120_34
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

42839..43543
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00037A1742
Uncharacterized protein {ECO:0000313|EMBL:EEF58074.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
N-terminal cleavage protein
berkeley_reactor_200306_planktonic_scaffold_190120_35
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

43890..44750
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPX7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58074.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
N-terminal cleavage protein
berkeley_reactor_200306_planktonic_scaffold_190120_36
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

44795..46678
DNA (1884bp) protein (628aa)
Immunoglobulin I-set domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPX8_9BACT
Immunoglobulin I-set domain protein {ECO:0000313|EMBL:EEF58075.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_190120_37
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(46760..47866)
DNA (1107bp) protein (369aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
3-isopropylmalate dehydrogenase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLK8_9BACT
3-isopropylmalate dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_190120_38
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(47951..49966)
DNA (2016bp) protein (672aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XA99_9BACT
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:EEF63440.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_190120_39
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

50005..50523
DNA (519bp) protein (173aa)
NUDIX hydrolase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPM5_9BACT
NUDIX hydrolase {ECO:0000313|EMBL:EEF58253.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
NUDIX hydrolase
berkeley_reactor_200306_planktonic_scaffold_190120_40
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

50563..51078
DNA (516bp) protein (172aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
CMP/dCMP deaminase zinc-binding n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPM4_9BACT
zinc-binding CMP/dCMP deaminase
berkeley_reactor_200306_planktonic_scaffold_190120_41
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(51130..51939)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCT1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62277.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_190120_42
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

52306..52560
DNA (255bp) protein (85aa)
Glycoside hydrolase 97 n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SH81_RHOMR
glycoside hydrolase
Glycoside hydrolase 97 {ECO:0000313|EMBL:AEN72309.1}; Flags: Precursor;; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
berkeley_reactor_200306_planktonic_scaffold_190120_43
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

52609..53580
DNA (972bp) protein (324aa)
Auxin Efflux Carrier n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZ09_9BACT
transporter
Transporter {ECO:0000313|EMBL:AKC84186.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_190120_44
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53620..54024)
DNA (405bp) protein (135aa)
uncharacterized protein
Uncharacterized protein {ECO:0000313|EMBL:BAP87316.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
Copper resistance protein CopC id=14626965 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
berkeley_reactor_200306_planktonic_scaffold_190120_45
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(54085..55056)
DNA (972bp) protein (324aa)
Transcriptional regulator, AraC family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCC3_9BACT
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEF62591.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
araC; AraC family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_190120_46
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(55070..56086)
DNA (1017bp) protein (339aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
UDP-3-O-acylglucosamine N-acyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRY0_9BACT
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
berkeley_reactor_200306_planktonic_scaffold_190120_47
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

56146..57288
DNA (1143bp) protein (381aa)
Oxidoreductase domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRY1_9BACT
Oxidoreductase domain protein {ECO:0000313|EMBL:EEF57392.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
oxidoreductase domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_190120_48
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(57682..58674)
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI000345A134
glucokinase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
berkeley_reactor_200306_planktonic_scaffold_190120_49
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

58922..62083
DNA (3162bp) protein (1054aa)
Non-specific serine/threonine protein kinase {ECO:0000313|EMBL:EEF61694.1}; EC=2.7.11.1 {ECO:0000313|EMBL:EEF61694.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Non-specific serine/threonine protein kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEI0_9BACT
SNF2/helicase domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_190120_50
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

62342..63760
DNA (1419bp) protein (473aa)
Lysophospholipase L1-like esterase n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6B390_9BACT
Lysophospholipase L1-like esterase {ECO:0000313|EMBL:EIQ01732.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
hydrolase GDSL
berkeley_reactor_200306_planktonic_scaffold_190120_51
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

64125..65357
DNA (1233bp) protein (411aa)
Na+/H+ antiporter NhaD-like permease id=3692927 bin=GWF2_Lentisphaerae_57_35 species=Desulfobacter postgatei genus=Desulfobacter taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
Na+/H+ antiporter NhaD-like permease
Tax=GWF2_Lentisphaerae_57_35_curated
berkeley_reactor_200306_planktonic_scaffold_190120_52
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

65426..67840
DNA (2415bp) protein (805aa)
Glycoside hydrolase family 2 sugar binding protein n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6ZQ73_MELRP
glycoside hydrolase family 2 sugar binding protein
Glycoside hydrolase family 2 sugar binding protein {ECO:0000313|EMBL:AFN74219.1}; TaxID=1191523 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter roseus (strain JCM 17771 / P3M-2).;"
berkeley_reactor_200306_planktonic_scaffold_190120_53
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

67941..69479
DNA (1539bp) protein (513aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC82983.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
Sialate O-acetylesterase id=2903387 bin=GWF2_Lentisphaerae_49_21 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
berkeley_reactor_200306_planktonic_scaffold_190120_54
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

69564..71954
DNA (2391bp) protein (797aa)
Beta-galactosidase {ECO:0000313|EMBL:AEU36615.1}; EC=3.2.1.23 {ECO:0000313|EMBL:AEU36615.1};; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
Beta-galactosidase n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NWA3_GRAMM
beta-galactosidase
berkeley_reactor_200306_planktonic_scaffold_190120_55
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71984..73504
DNA (1521bp) protein (507aa)
Uncharacterized protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L584_FRAAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFC86662.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
berkeley_reactor_200306_planktonic_scaffold_190120_56
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

73815..74756
DNA (942bp) protein (314aa)
Lipolytic protein G-D-S-L family n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V432_TERSS
G-D-S-L family lipolytic protein
Lipolytic protein G-D-S-L family {ECO:0000313|EMBL:ADV82523.1}; Flags: Precursor;; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
berkeley_reactor_200306_planktonic_scaffold_190120_57
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74761..75618
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9D9W0_9BURK
Esterase SGNH hydrolase-type subgroup {ECO:0000313|EMBL:KFC71445.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_190120_58
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

75736..76806
DNA (1071bp) protein (357aa)
arabinogalactan endo-1,4-beta-galactosidase (EC:3.2.1.89)
Arabinogalactan endo-1,4-beta-galactosidase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNL3_OPITP
Tax=RBG_13_Planctomycetes_60_9_curated
berkeley_reactor_200306_planktonic_scaffold_190120_59
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

76803..78029
DNA (1227bp) protein (409aa)
Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_156 n=1 Tax=Oikopleura dioica RepID=E4XU21_OIKDI
Lysophospholipase L1-like esterase {ECO:0000313|EMBL:CDM64170.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
GDSL family lipase
berkeley_reactor_200306_planktonic_scaffold_190120_60
RIFOXYB2_FULL_RIF07_49_35_curated, RIF7, Bacteria

Not on your lists

comp(78177..80897)
DNA (2721bp) protein (907aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00036A054F
glycoside hydrolase family 2 sugar binding protein
Tax=RIFOXYB2_FULL_RIF07_49_35_curated
Displaying items 31-60 of 73 in total

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