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ALUMROCK_MS4_Beggiotoa_37_524_curated

ALUMROCK_MS4_Thiotrichales_37_1
In projects: ALUMROCK_MS4  |  alumrock-genomes

Consensus taxonomy: Thiotrichales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: ALUMROCK_MS4_Beggiotoa_37_524 Manually curated genome
Original version: ALUMROCK_MS4_Beggiotoa_37_524

Properties

Avg. coverage: 1.00 Longest contig: 99.60 Kbp Bin length: 3.91 Mbp GC content: 36.77 %
Contigs count: 288 Features count: 3554 rRNAs count: 1 tRNAs count: 44

Genome completeness

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Displaying items 101-150 of 288 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
ar4r2_scaffold_2818
Order: Thiotrichales (76.92%)
13 12284 bp 36.09 1.00 82.55
ar4r2_scaffold_3191
Order: Thiotrichales (53.85%)
13 9262 bp 35.81 1.00 80.72
ar4r2_scaffold_14264
Class: Gammaproteobacteria (50%)
12 6081 bp 35.44 1.00 61.17
ar4r2_scaffold_2954
Order: Thiotrichales (50%)
12 15264 bp 37.43 1.00 81.67
ar4r2_scaffold_4257
Genus: Beggiatoa (50%)
12 11493 bp 36.20 1.00 76.82
ar4r2_scaffold_2629
Species: Thioploca ingrica (50%)
12 14970 bp 36.17 1.00 83.71
ar4r2_scaffold_6653
Order: Thiotrichales (50%)
12 10797 bp 38.97 1.00 83.75
ar4r2_scaffold_2063
Class: Gammaproteobacteria (50%)
12 13634 bp 35.76 1.00 84.47
ar4r2_scaffold_3853
Order: Thiotrichales (66.67%)
12 11300 bp 37.32 1.00 90.58
ar4r2_scaffold_1683
Species: Thioploca ingrica (50%)
12 15466 bp 37.54 1.00 83.58
ar4r2_scaffold_2735
Order: Thiotrichales (58.33%)
12 10670 bp 37.50 1.00 79.33
ar4r2_scaffold_1522
Order: Thiotrichales (58.33%)
12 16067 bp 38.53 1.00 86.66
ar4r2_scaffold_2444
Order: Thiotrichales (58.33%)
12 10675 bp 36.32 1.00 91.17
ar4r2_scaffold_3475
Order: Thiotrichales (50%)
12 7869 bp 39.05 1.00 83.78
ar4r2_scaffold_1770
Species: Thioploca ingrica (50%)
12 13910 bp 38.39 1.00 88.84
ar4r2_scaffold_1386
Order: Thiotrichales (75%)
12 16981 bp 36.74 1.00 88.23
ar4r2_scaffold_1844
Phylum: Proteobacteria (63.64%)
11 14041 bp 36.98 1.00 91.04
ar4r2_scaffold_2112
Order: Thiotrichales (63.64%)
11 12200 bp 36.05 1.00 88.33
ar4r2_scaffold_2344
Order: Thiotrichales (72.73%)
11 11457 bp 35.22 1.00 91.02
ar4r2_scaffold_1706
Order: Thiotrichales (81.82%)
11 14358 bp 38.91 1.00 86.44
ar4r2_scaffold_3097
Phylum: Proteobacteria (90.91%)
11 13617 bp 37.12 1.00 89.69
ar4r2_scaffold_2285
Order: Thiotrichales (90.91%)
11 11752 bp 38.20 1.00 82.61
ar4r2_scaffold_9891 11 7005 bp 37.76 1.00 89.38
ar4r2_scaffold_2570
Order: Thiotrichales (63.64%)
11 10784 bp 37.97 1.00 89.13
ar4r2_scaffold_5166
Order: Thiotrichales (60%)
10 10974 bp 36.87 1.00 89.07
ar4r2_scaffold_2787
Order: Thiotrichales (50%)
10 9467 bp 37.66 1.00 81.54
ar4r2_scaffold_5946
Class: Gammaproteobacteria (50%)
10 5482 bp 38.14 1.00 55.55
ar4r2_scaffold_4197
Order: Thiotrichales (70%)
10 6849 bp 35.86 1.00 84.23
ar4r2_scaffold_4811
Domain: Bacteria (60%)
10 6256 bp 37.20 1.00 78.60
ar4r2_scaffold_4406
Species: Candidatus Thiomargarita nelsonii (60%)
10 12396 bp 37.54 1.00 90.78
ar4r2_scaffold_3002
Order: Thiotrichales (90%)
10 9338 bp 34.87 1.00 82.28
ar4r2_scaffold_6415
Phylum: Proteobacteria (70%)
10 10141 bp 36.15 1.00 83.69
ar4r2_scaffold_7054 10 6683 bp 37.44 1.00 85.96
ar4r2_scaffold_1441
Species: Thioploca ingrica (50%)
10 16736 bp 34.57 1.00 89.21
ar4r2_scaffold_3908
Genus: Beggiatoa (50%)
10 12462 bp 35.93 1.00 86.59
ar4r2_scaffold_1611
Order: Thiotrichales (70%)
10 16019 bp 36.50 1.00 82.50
ar4r2_scaffold_2077
Order: Thiotrichales (50%)
10 13002 bp 37.96 1.00 95.32
ar4r2_scaffold_3163
Species: Thioploca ingrica (50%)
10 15434 bp 35.84 1.00 86.00
ar4r2_scaffold_2082
Order: Thiotrichales (70%)
10 17195 bp 36.84 1.00 85.98
ar4r2_scaffold_3580
Order: Thiotrichales (60%)
10 12065 bp 36.10 1.00 88.35
ar4r2_scaffold_3560
Order: Thiotrichales (55.56%)
9 8367 bp 37.66 1.00 84.95
ar4r2_scaffold_3058
Class: Gammaproteobacteria (55.56%)
9 9711 bp 35.29 1.00 80.38
ar4r2_scaffold_3814
Phylum: Proteobacteria (66.67%)
9 7372 bp 37.21 1.00 93.07
ar4r2_scaffold_2887
Order: Thiotrichales (55.56%)
9 10003 bp 35.41 1.00 84.87
ar4r2_scaffold_3865
Order: Thiotrichales (66.67%)
9 7527 bp 36.91 1.00 81.23
ar4r2_scaffold_8493
Phylum: Proteobacteria (55.56%)
9 6519 bp 35.43 1.00 91.33
ar4r2_scaffold_2952
Order: Thiotrichales (66.67%)
9 9062 bp 34.57 1.00 84.62
ar4r2_scaffold_6413
Species: Thioploca ingrica (55.56%)
9 7399 bp 37.48 1.00 84.25
ar4r2_scaffold_5517
Order: Thiotrichales (55.56%)
9 5570 bp 37.45 1.00 85.75
ar4r2_scaffold_2753
Order: Thiotrichales (55.56%)
9 9799 bp 37.20 1.00 87.71
Displaying items 101-150 of 288 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.