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SCNpilot_cont_1000_bf_scaffold_73_curated

Search features with annotation key words

Displaying items 1-30 of 226 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_73_curated_1
Streptomyces albus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(73..246)
DNA (174bp) protein (58aa)
Integrase n=1 Tax=Streptomyces albus J1074 RepID=D6AXB4_9ACTO
subunit of transposase
Integrase {ECO:0000313|EMBL:EFE82829.2}; TaxID=457425 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces albus J1074.;"
SCNpilot_cont_1000_bf_scaffold_73_curated_2
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(676..1758)
DNA (1083bp) protein (361aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Fischerella muscicola RepID=UPI0002D70640
Putative ABC-type transport system permease component {ECO:0000313|EMBL:AHY45392.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
nucleoside ABC transporter membrane protein
SCNpilot_cont_1000_bf_scaffold_73_curated_3
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1755..2747)
DNA (993bp) protein (331aa)
Inner-membrane translocator n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1R0T8_SPISS
ABC transporter permease {ECO:0000313|EMBL:KJS47728.1}; TaxID=1629714 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein
SCNpilot_cont_1000_bf_scaffold_73_curated_4
Clostridium tetani, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2851..4320)
DNA (1470bp) protein (490aa)
ABC transporter-like protein; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
Sugar transport ATP-binding protein n=1 Tax=Clostridium tetani 12124569 RepID=U6EUT6_CLOTA
Sugar transport ATP-binding protein {ECO:0000313|EMBL:CDI48428.1}; TaxID=1231072 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetani 12124569.;"
SCNpilot_cont_1000_bf_scaffold_73_curated_5
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4414..5493)
DNA (1080bp) protein (360aa)
ABC transporter substrate-binding protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003465CE3
Basic membrane protein {ECO:0000313|EMBL:EEG52287.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
nucleoside-binding protein
SCNpilot_cont_1000_bf_scaffold_73_curated_6
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5544..6959)
DNA (1416bp) protein (472aa)
S-adenosylhomocysteine deaminase n=1 Tax=Frankia sp. CN3 RepID=G6HGK9_9ACTO
Amidohydrolase {ECO:0000313|EMBL:EFC82961.1}; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
putative hydrolase
SCNpilot_cont_1000_bf_scaffold_73_curated_7
Actinotalea fermentans, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7240..8373
DNA (1134bp) protein (378aa)
hypothetical protein n=1 Tax=Cellulomonas sp. JC225 RepID=UPI0002F07B6F
Iron transporter {ECO:0000313|EMBL:KGM15965.1}; TaxID=862422 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133.;"
proposed F420-0 ABC transporter, periplasmic F420-0 binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_cont_1000_bf_scaffold_73_curated_8
Cellulomonas bogoriensis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8370..9491
DNA (1122bp) protein (374aa)
Iron ABC transporter, permease protein, putative id=7721559 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Iron ABC transporter permease {ECO:0000313|EMBL:KGM10511.1}; TaxID=1386082 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas bogoriensis 69B4 = DSM 16987.;"
Fe3+-siderophore ABC transporter permease; K02015 iron complex transport system permease protein
SCNpilot_cont_1000_bf_scaffold_73_curated_9
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9488..10315
DNA (828bp) protein (276aa)
cobalamin/Fe3+-siderophore ABC transporter ATPase id=7721558 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Histidinol phosphatase {ECO:0000313|EMBL:KGM11984.1}; TaxID=947969 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
cobalamin/Fe3+-siderophore ABC transporter ATPase
SCNpilot_cont_1000_bf_scaffold_73_curated_10
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10441..11391
DNA (951bp) protein (317aa)
luciferase n=1 Tax=Agromyces subbeticus RepID=UPI0003B65B36
Putative dehydrogenase protein {ECO:0000313|EMBL:EAR25999.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
luciferase-like monooxygenase
SCNpilot_cont_1000_bf_scaffold_73_curated_11

Not on your lists

11493..12422
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=actinobacterium SCGC AAA027-J17 RepID=UPI0003686AC1
Uncharacterized protein {ECO:0000313|EMBL:KGA21585.1}; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
SCNpilot_cont_1000_bf_scaffold_73_curated_12
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12659..13963
DNA (1305bp) protein (435aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
Enolase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XKR0_NAKMY
SCNpilot_cont_1000_bf_scaffold_73_curated_13
Rhodococcus pyridinivorans, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13976..14887
DNA (912bp) protein (304aa)
UPI0003D69F65 related cluster n=1 Tax=unknown RepID=UPI0003D69F65
Uncharacterized protein {ECO:0000313|EMBL:AHD23058.1}; TaxID=1435356 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus pyridinivorans SB3094.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_73_curated_14
Mycobacterium immunogenum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14902..15432
DNA (531bp) protein (177aa)
FIG004853: possible toxin to DivIC n=1 Tax=Rhodococcus sp. EsD8 RepID=N1M8M4_9NOCA
Um strain SMUC14 PROKKA_contig000030, whole genome shotgun sequence {ECO:0000313|EMBL:KIU38394.1}; TaxID=83262 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium immunogenum.;"
hypothetical protein; K09009 hypothetical protein
SCNpilot_cont_1000_bf_scaffold_73_curated_15
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15530..16144
DNA (615bp) protein (205aa)
Pit accessory protein n=1 Tax=Longispora albida RepID=UPI00036B6EBF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGL21280.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
SCNpilot_cont_1000_bf_scaffold_73_curated_16
Rhodococcus sp. B7740, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16153..17139
DNA (987bp) protein (329aa)
inorganic phosphate transporter n=1 Tax=Rhodococcus erythropolis RepID=UPI0002E00795
Low-affinity inorganic phosphate transporter {ECO:0000313|EMBL:AJW42466.1}; TaxID=1564114 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. B7740.;"
phosphate transport protein; K03306 inorganic phosphate transporter, PiT family
SCNpilot_cont_1000_bf_scaffold_73_curated_17
Segniliparus rotundus, Segniliparus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17489..17710
DNA (222bp) protein (74aa)
Translation initiation factor IF-1 n=2 Tax=Segniliparus RepID=D6ZBJ6_SEGRD
translation initiation factor IF-1; K02518 translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=640132 species="Bacteria; Actinobacteria; Corynebacteriales; Segniliparaceae; Segniliparus.;" source="Segniliparus rotundus (strain ATCC BAA-972 / CDC 1076 / CIP 108378 /; DSM 44985 / JCM 13578).;"
SCNpilot_cont_1000_bf_scaffold_73_curated_18
Actinomyces neuii, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17870..17983
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Actinomyces neuii BVS029A5 RepID=K0YUN0_9ACTO
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=888439 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces neuii BVS029A5.;"
rpmJ; 50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
SCNpilot_cont_1000_bf_scaffold_73_curated_19
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


18177..18554
DNA (378bp) protein (126aa)
30S ribosomal protein S13 n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XCL1_NAKMY
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCNpilot_cont_1000_bf_scaffold_73_curated_20
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


18561..18971
DNA (411bp) protein (137aa)
30S ribosomal protein S11 n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XCL2_NAKMY
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCNpilot_cont_1000_bf_scaffold_73_curated_21
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


19002..19607
DNA (606bp) protein (202aa)
30S ribosomal protein S4 n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0DXY3_9MICO
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
SCNpilot_cont_1000_bf_scaffold_73_curated_22
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19736..20767
DNA (1032bp) protein (344aa)
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera mult
DNA-directed RNA polymerase subunit alpha n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XCL4_NAKMY
SCNpilot_cont_1000_bf_scaffold_73_curated_23
Amycolatopsis halophila, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


20827..21645
DNA (819bp) protein (273aa)
50S ribosomal protein L17 n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEF8E
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=592678 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis halophila YIM 93223.;"
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
SCNpilot_cont_1000_bf_scaffold_73_curated_24
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21738..22661
DNA (924bp) protein (308aa)
tRNA pseudouridine synthase A (EC:5.4.99.12); K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multi
tRNA pseudouridine synthase A n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XCL6_NAKMY
SCNpilot_cont_1000_bf_scaffold_73_curated_25
Streptomyces sp. e14, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22756..23547
DNA (792bp) protein (264aa)
Regulatory protein, LuxR n=1 Tax=Streptomyces sp. e14 RepID=D6K6E9_9ACTO
Regulatory protein, LuxR {ECO:0000313|EMBL:EFF89897.2}; TaxID=645465 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. e14.;"
TrmB family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_73_curated_26
unknown

Not on your lists

comp(23553..23783)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_73_curated_27
Streptomyces bottropensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23990..25009
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Streptomyces bottropensis ATCC 25435 RepID=M3FHP3_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EMF52460.1}; TaxID=1054862 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bottropensis ATCC 25435.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_73_curated_28
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


25320..25763
DNA (444bp) protein (148aa)
50S ribosomal protein L13 n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XCL8_NAKMY
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCNpilot_cont_1000_bf_scaffold_73_curated_29
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


25760..26371
DNA (612bp) protein (204aa)
30S ribosomal protein S9 n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XCL9_NAKMY
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCNpilot_cont_1000_bf_scaffold_73_curated_30
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26371..27873
DNA (1503bp) protein (501aa)
phosphoglucosamine mutase (EC:5.4.2.10); K03431 phosphoglucosamine mutase [EC:5.4.2.10]
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078319}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078300};; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI000376AFAA
Displaying items 1-30 of 226 in total

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