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SCNpilot_expt_1000_bf_scaffold_454_curated

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Displaying items 1-30 of 142 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_454_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..161
DNA (159bp) protein (53aa)
arcC; carbamate kinase ArcC (EC:2.7.2.2); K00926 carbamate kinase [EC:2.7.2.2]
Carbamate kinase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PTB5_9BRAD
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_454_curated_2
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

204..1442
DNA (1239bp) protein (413aa)
amidohydrolase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035F156A
Bradyrhizobium elkanii strain UASWS1015 Contig182, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46311.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_454_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1768..2982
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PLF9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41614.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1
SCNpilot_expt_1000_bf_scaffold_454_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3019..3894
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PTA2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41613.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_454_curated_5
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3891..6398
DNA (2508bp) protein (836aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NX10_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS31975.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_454_curated_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6843..8009
DNA (1167bp) protein (389aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Afipia felis ATCC 53690 RepID=K8NL04_AFIFE
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EKS28215.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
acriflavine resistance protein E; K03585 membrane fusion protein
SCNpilot_expt_1000_bf_scaffold_454_curated_7
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8019..11174
DNA (3156bp) protein (1052aa)
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6I8_9BRAD
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family {ECO:0000313|EMBL:EFI51935.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
acrB; RND multidrug efflux transporter; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family rbh
SCNpilot_expt_1000_bf_scaffold_454_curated_8
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11195..12397)
DNA (1203bp) protein (401aa)
Cysteine desulfurase n=1 Tax=Rhodovulum sp. PH10 RepID=J6IWM0_9RHOB
Cysteine desulfurase {ECO:0000313|EMBL:KFE68470.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
cysteine desulfurase
SCNpilot_expt_1000_bf_scaffold_454_curated_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12397..13506)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRY2_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31204.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
transglutaminase
SCNpilot_expt_1000_bf_scaffold_454_curated_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13536..14054)
DNA (519bp) protein (173aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X9_9BRAD
Thiol-disulfide oxidoreductase ResA {ECO:0000313|EMBL:CEG07213.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
thioredoxin family protein
SCNpilot_expt_1000_bf_scaffold_454_curated_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14578..15177
DNA (600bp) protein (200aa)
fdoG; formate dehydrogenase-O major subunit FdoG (EC:1.2.1.2)
Molybdopterin oxidoreductase Fe4S4 region n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X8_9BRAD
Formate dehydrogenase-O major subunit {ECO:0000313|EMBL:CEG07214.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_1000_bf_scaffold_454_curated_12
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15226..17652
DNA (2427bp) protein (809aa)
fdoG; formate dehydrogenase-O major subunit FdoG (EC:1.2.1.2)
Formate dehydrogenase, alpha subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X7_9BRAD
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:EFI52307.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_expt_1000_bf_scaffold_454_curated_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17668..18603
DNA (936bp) protein (312aa)
Formate dehydrogenase, beta subunit n=1 Tax=Afipia felis ATCC 53690 RepID=K8NYF3_AFIFE
Formate dehydrogenase, beta subunit {ECO:0000313|EMBL:EKS31208.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
fdoH; formate dehydrogenase-O iron-sulfur subunit FdoH; K00124 formate dehydrogenase, beta subunit
SCNpilot_expt_1000_bf_scaffold_454_curated_14
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18606..19277
DNA (672bp) protein (224aa)
Formate dehydrogenase, gamma subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X5_9BRAD
Formate dehydrogenase, gamma subunit {ECO:0000313|EMBL:EFI52305.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
formate dehydrogenase, gamma subunit; K00127 formate dehydrogenase, gamma subunit
SCNpilot_expt_1000_bf_scaffold_454_curated_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19386..20300
DNA (915bp) protein (305aa)
Protein FdhE homolog n=1 Tax=Afipia felis ATCC 53690 RepID=K8NUU7_AFIFE
Protein FdhE homolog {ECO:0000256|HAMAP-Rule:MF_00611}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
fdhE; formate dehydrogenase accessory protein FdhE; K02380 FdhE protein
SCNpilot_expt_1000_bf_scaffold_454_curated_16
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20311..21741
DNA (1431bp) protein (477aa)
selA; selenocysteine synthase (EC:2.9.1.1); K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
L-seryl-tRNA selenium transferase SelA {ECO:0000313|EMBL:AEI07498.1}; EC=2.9.1.1 {ECO:0000313|EMBL:AEI07498.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
L-seryl-tRNA(Sec) selenium transferase n=2 Tax=Oligotropha carboxidovorans RepID=B6JC80_OLICO
SCNpilot_expt_1000_bf_scaffold_454_curated_17
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21738..22535
DNA (798bp) protein (266aa)
Sel1-like repeat protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BMH0_OLICM
Sel1-like repeat-containing protein; K07126
Sel1-like repeat protein {ECO:0000313|EMBL:AEI07497.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_454_curated_18
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22532..24607
DNA (2076bp) protein (692aa)
Selenocysteine-specific elongation factor SelB n=2 Tax=Oligotropha carboxidovorans RepID=B6JC82_OLICO
selB2; selenocysteine-specific elongation factor SelB; K03833 selenocysteine-specific elongation factor
Selenocysteine-specific elongation factor SelB {ECO:0000313|EMBL:AEI07496.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_454_curated_19
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24626..25093
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI52300.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_454_curated_20
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25077..25493
DNA (417bp) protein (139aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JC84_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07494.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_454_curated_21
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25514..26563)
DNA (1050bp) protein (350aa)
selD; selenophosphate synthase SelD (EC:2.7.9.3); K01008 selenide, water dikinase [EC:2.7.9.3]
Selenophosphate synthase SelD {ECO:0000313|EMBL:AEI07493.1}; EC=2.7.9.3 {ECO:0000313|EMBL:AEI07493.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Selenide, water dikinase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2W8_9BRAD
SCNpilot_expt_1000_bf_scaffold_454_curated_22
Thalassospira sp. HJ, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26799..27038)
DNA (240bp) protein (80aa)
Sulfur/thiosulfate oxidation protein SoxZ n=1 Tax=uncultured bacterium ws406H10 RepID=I1X5E4_9BACT
Sulfur oxidation protein {ECO:0000313|EMBL:KJE34724.1}; TaxID=1616823 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira sp. HJ.;"
soxZ; sulfur oxidation protein
SCNpilot_expt_1000_bf_scaffold_454_curated_23
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27237..28580)
DNA (1344bp) protein (448aa)
gdh; NADP-specific glutamate dehydrogenase Gdh (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
glutamate dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI0002DE7498
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_expt_1000_bf_scaffold_454_curated_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29071..29337)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6Y3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38352.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_454_curated_25
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29530..30075)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DDE3_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:AHY56069.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_454_curated_26
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30321..30920)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NTR8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS31864.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_454_curated_27
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31236..32597
DNA (1362bp) protein (454aa)
Twin-arginine translocation pathway signal n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3J7_9BRAD
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:EFI52527.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
twin-arginine translocation pathway signal
SCNpilot_expt_1000_bf_scaffold_454_curated_28
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32762..33637
DNA (876bp) protein (292aa)
Inner-membrane translocator n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3J6_9BRAD
LIV-I protein H {ECO:0000313|EMBL:CEG06891.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
inner-membrane translocator
SCNpilot_expt_1000_bf_scaffold_454_curated_29
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33650..35512
DNA (1863bp) protein (621aa)
ABC transporter related protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3J5_9BRAD
ABC transporter related protein {ECO:0000313|EMBL:EFI52525.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_454_curated_30
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35509..36207
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NR16_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30874.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
branched-chain amino acid ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
Displaying items 1-30 of 142 in total

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