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SCNpilot_expt_1000_bf_scaffold_2908_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2908_curated_1
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1109)
DNA (1107bp) protein (369aa)
FAD-dependent oxidoreductase n=1 Tax=Afipia birgiae RepID=UPI0003818EFA
Uncharacterized protein {ECO:0000313|EMBL:EJN12388.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2908_curated_2
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1150..1467)
DNA (318bp) protein (106aa)
ArsR family transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI0002F8C600
Putative transcriptional regulator {ECO:0000313|EMBL:EIG62879.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
ArsR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2908_curated_3
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1596..1871)
DNA (276bp) protein (92aa)
Tax=RBG_16_Gallionellales_56_9_curated
SCNpilot_expt_1000_bf_scaffold_2908_curated_4
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2323..2640
DNA (318bp) protein (106aa)
Arsenite efflux pump n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RHI1_PHEZH
arsenite efflux pump protein; K03325 arsenite transporter, ACR3 family
Arsenite efflux pump {ECO:0000313|EMBL:ACG77441.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_2908_curated_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2645..3883)
DNA (1239bp) protein (413aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IZK9_RHOP2
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABD06351.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_1000_bf_scaffold_2908_curated_6
unknown

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comp(3885..3992)
DNA (108bp) protein (36aa)
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI0002E25918
SCNpilot_expt_1000_bf_scaffold_2908_curated_7
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5941..6822
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003769BF1
phosphate/phosphonate ABC transporter; K02044 phosphonate transport system substrate-binding protein
Phosphate/phosphonate ABC transporter {ECO:0000313|EMBL:ADH88605.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_2908_curated_8
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6819..8264
DNA (1446bp) protein (482aa)
putative sensor histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
Putative sensor histidine kinase n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5B453_METEA
SCNpilot_expt_1000_bf_scaffold_2908_curated_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8254..9579
DNA (1326bp) protein (442aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A8D0_STAND
two component sigma-54 specific Fis family transcriptional regulator
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ADH88603.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_2908_curated_10
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9745..10269
DNA (525bp) protein (175aa)
arsenite oxidase small subunit; K08355 arsenite oxidase small subunit [EC:1.20.9.1]
Twin-arginine translocation pathway signal n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I309_9RHIZ
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:EHK52647.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_2908_curated_11
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10284..11987
DNA (1704bp) protein (568aa)
arsenite oxidase large subunit (EC:1.20.98.1); K08356 arsenite oxidase large subunit [EC:1.20.9.1]
Arsenite oxidase large subunit n=1 Tax=Oceanibaculum indicum P24 RepID=K2K0P8_9PROT
Arsenite oxidase large subunit {ECO:0000313|EMBL:EKE76334.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
SCNpilot_expt_1000_bf_scaffold_2908_curated_12
unknown

Not on your lists

comp(11896..12144)
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2908_curated_13
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12437..12805
DNA (369bp) protein (123aa)
Arsenite oxidase large subunit {ECO:0000313|EMBL:CCV04584.1}; EC=1.20.9.1 {ECO:0000313|EMBL:CCV04584.1};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
arsenite oxidase large subunit; K08356 arsenite oxidase large subunit [EC:1.20.9.1]
Arsenite oxidase large subunit n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EIS8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2908_curated_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13523..13924)
DNA (402bp) protein (134aa)
Transcriptional regulator, MerR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QH47_NITHX
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABE64450.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_2908_curated_15
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13992..16118
DNA (2127bp) protein (709aa)
cadA3; cadmium-translocating P-type ATPase (EC:3.6.3.3); K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
Heavy metal translocating P-type ATPase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SMW0_NITWN
Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase {ECO:0000313|EMBL:AEI05211.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_2908_curated_16
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16194..16649
DNA (456bp) protein (152aa)
Disulfide bond formation protein n=6 Tax=Pseudomonas RepID=I4CZN4_PSEST
disulfide bond formation protein
Disulfide bond formation protein {ECO:0000313|EMBL:AFM35541.1}; TaxID=1196835 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri CCUG 29243.;"
SCNpilot_expt_1000_bf_scaffold_2908_curated_17
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16646..17311
DNA (666bp) protein (222aa)
DSBA oxidoreductase n=1 Tax=Nitratireductor indicus C115 RepID=K2NQW7_9RHIZ
DSBA oxidoreductase {ECO:0000313|EMBL:EKF40239.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
DSBA oxidoreductase
SCNpilot_expt_1000_bf_scaffold_2908_curated_18
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17907..18491)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G7J4_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL76731.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_expt_1000_bf_scaffold_2908_curated_19
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18721..19167)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SA49_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHB47292.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2908_curated_20
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19121..21643)
DNA (2523bp) protein (841aa)
Heavy metal efflux pump CzcA n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q132X0_RHOPS
CzcA family heavy metal efflux protein; K15726 cobalt-zinc-cadmium resistance protein CzcA
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:ABS69208.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_2908_curated_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22310..23320)
DNA (1011bp) protein (337aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QDR6_RHOPT
RND family efflux transporter MFP subunit; K15727 cobalt-zinc-cadmium resistance protein CzcB
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACF00817.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_expt_1000_bf_scaffold_2908_curated_22
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23321..24616)
DNA (1296bp) protein (432aa)
Outer membrane efflux protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM85_NITHX
outer membrane efflux protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
Outer membrane efflux protein {ECO:0000313|EMBL:ABE62662.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_2908_curated_23
unknown

Not on your lists

comp(24679..25041)
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2908_curated_24
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25799..26338
DNA (540bp) protein (180aa)
FAD-dependent oxidoreductase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00036F8A5D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGJ68633.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
SCNpilot_expt_1000_bf_scaffold_2908_curated_25
unknown

Not on your lists

comp(26700..26897)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2908_curated_26
unknown

Not on your lists

comp(27072..27221)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2908_curated_27
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27566..28723
DNA (1158bp) protein (386aa)
Blr3093 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89QN1_BRADU
Arabinose ABC transporter permease {ECO:0000313|EMBL:ETR76803.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein rbh
Displaying 27 items

View Taxonomy