ggKbase home page

SCNpilot_expt_1000_bf_scaffold_743_curated

Search features with annotation key words

Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_743_curated_1
unknown

Not on your lists

comp(71..2287)
DNA (2217bp) protein (739aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_743_curated_2
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2287..3390)
DNA (1104bp) protein (368aa)
radical SAM protein; K01012 biotin synthetase [EC:2.8.1.6]
Radical SAM domain protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JYX4_HYPDA
Radical SAM domain protein {ECO:0000313|EMBL:ADJ23576.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_743_curated_3
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3619..4434)
DNA (816bp) protein (272aa)
pyrroline-5-carboxylate reductase; K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2]
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=626418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae (strain BGR1).;"
Pyrroline-5-carboxylate reductase n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AB64_BURGB
SCNpilot_expt_1000_bf_scaffold_743_curated_4
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4496..6091)
DNA (1596bp) protein (532aa)
Integral membrane protein MviN n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RTM8_9BURK
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
hypothetical protein; K03980 virulence factor
SCNpilot_expt_1000_bf_scaffold_743_curated_5
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6283..6546
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0EVQ5_CUPNN
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
SCNpilot_expt_1000_bf_scaffold_743_curated_6
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6530..7303)
DNA (774bp) protein (258aa)
Enzyme with a TIM-barrel fold protein n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FX12_9BURK
Enzyme with a TIM-barrel fold protein {ECO:0000313|EMBL:EOA06028.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
hypothetical protein; K06997
SCNpilot_expt_1000_bf_scaffold_743_curated_7
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7420..8463
DNA (1044bp) protein (348aa)
Twitching motility protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RTN9_9BURK
Twitching motility protein {ECO:0000313|EMBL:EFV96125.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
pilus retraction protein PilT; K02669 twitching motility protein PilT
SCNpilot_expt_1000_bf_scaffold_743_curated_8
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8597..9730
DNA (1134bp) protein (378aa)
twitching motility protein PilT n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002DAC589
Twitching motility protein PilT {ECO:0000313|EMBL:KIF81225.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
pilU1; PilU twitching motility protein; K02670 twitching motility protein PilU
SCNpilot_expt_1000_bf_scaffold_743_curated_9
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9759..9980)
DNA (222bp) protein (74aa)
translation initiation factor IF-1; K02518 translation initiation factor IF-1 id=12493149 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
infA; translation initiation factor IF-1
SCNpilot_expt_1000_bf_scaffold_743_curated_10
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10133..11272
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI0003687615
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
SCNpilot_expt_1000_bf_scaffold_743_curated_11
unknown

Not on your lists

11262..12215
DNA (954bp) protein (318aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_743_curated_12
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

12212..12601
DNA (390bp) protein (130aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAB1_GEMAT
hypothetical membrane protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAH39709.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
SCNpilot_expt_1000_bf_scaffold_743_curated_13
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12507..13985)
DNA (1479bp) protein (493aa)
Ribosomal RNA large subunit methyltransferase RlmL {ECO:0000313|EMBL:AJK45115.1}; EC=2.1.1.173 {ECO:0000313|EMBL:AJK45115.1};; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
N6-adenine-specific DNA methylase; K07444 putative N6-adenine-specific DNA methylase [EC:2.1.1.-]
Putative N6-adenine-specific DNA methylase n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AB46_BURGB
SCNpilot_expt_1000_bf_scaffold_743_curated_14
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14072..14503)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I5E1_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_1000_bf_scaffold_743_curated_15
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14539..15822)
DNA (1284bp) protein (428aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia s
gamma-glutamyl phosphate reductase; K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
Gamma-glutamyl phosphate reductase n=1 Tax=Ralstonia sp. PBA RepID=I9W3Y3_9RALS
SCNpilot_expt_1000_bf_scaffold_743_curated_16
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15824..16846)
DNA (1023bp) protein (341aa)
holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7]
DNA polymerase III, delta subunit {ECO:0000313|EMBL:ERI30816.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ERI30816.1};; TaxID=985077 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia BC7.;"
DNA polymerase III delta subunit n=4 Tax=Burkholderia cenocepacia RepID=G7HJ37_9BURK
SCNpilot_expt_1000_bf_scaffold_743_curated_17
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16843..17355)
DNA (513bp) protein (171aa)
Rare lipoprotein B n=1 Tax=Herbaspirillum sp. YR522 RepID=J2W5N3_9BURK
LPS-assembly lipoprotein LptE {ECO:0000256|HAMAP-Rule:MF_01186}; Flags: Precursor;; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
lipoprotein; rlpb lipoprotein family; K03643 LPS-assembly lipoprotein
SCNpilot_expt_1000_bf_scaffold_743_curated_18
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17356..20028)
DNA (2673bp) protein (891aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2J6V6_9BURK
SCNpilot_expt_1000_bf_scaffold_743_curated_19
unknown

Not on your lists

comp(20081..20197)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_743_curated_20
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20194..21771)
DNA (1578bp) protein (526aa)
long-chain-fatty-acid--CoA ligase 2 (EC:6.2.1.3)
Long-chain-fatty-acid--CoA ligase 2 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HPS0_ACHXA
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_expt_1000_bf_scaffold_743_curated_21
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21890..22699
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Glaciibacter superstes RepID=UPI0003B41FEF
universal stress protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
SCNpilot_expt_1000_bf_scaffold_743_curated_22
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22736..23536
DNA (801bp) protein (267aa)
Transcriptional regulator, IclR family n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XWL4_ALCXX
Transcriptional regulator, IclR family
Acetate operon repressor {ECO:0000313|EMBL:CKH54318.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
SCNpilot_expt_1000_bf_scaffold_743_curated_23
Halorhodospira halophila, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23541..24758
DNA (1218bp) protein (406aa)
acetate kinase; K00925 acetate kinase [EC:2.7.2.1]
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=349124 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halophila (strain DSM 244 / SL1) (Ectothiorhodospira; halophila (strain DSM 244 / SL1)).;"
Acetate kinase n=1 Tax=Halorhodospira halophila (strain DSM 244 / SL1) RepID=A1WYR2_HALHL
SCNpilot_expt_1000_bf_scaffold_743_curated_24
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24805..25731)
DNA (927bp) protein (309aa)
phosphate butyryltransferase 1 (EC:2.3.1.19)
Phosphate butyryltransferase 1 {ECO:0000313|EMBL:ADP16200.1}; EC=2.3.1.19 {ECO:0000313|EMBL:ADP16200.1};; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
Phosphate butyryltransferase 1 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HUT5_ACHXA
SCNpilot_expt_1000_bf_scaffold_743_curated_25
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25782..27092)
DNA (1311bp) protein (437aa)
fumarylacetoacetase (EC:3.7.1.2); K01555 fumarylacetoacetase [EC:3.7.1.2]
fumarylacetoacetase n=1 Tax=Curvibacter lanceolatus RepID=UPI000382BB40
Fumarylacetoacetase {ECO:0000313|EMBL:KJA11791.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
SCNpilot_expt_1000_bf_scaffold_743_curated_26
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27089..28459)
DNA (1371bp) protein (457aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thioph
hmgA; homogentisate 1,2-dioxygenase; K00451 homogentisate 1,2-dioxygenase [EC:1.13.11.5]
homogentisate 1,2-dioxygenase n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00037BFEAC
SCNpilot_expt_1000_bf_scaffold_743_curated_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28620..29558
DNA (939bp) protein (313aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003629541
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU47469.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_1000_bf_scaffold_743_curated_28
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29594..30451)
DNA (858bp) protein (286aa)
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
purU; formyltetrahydrofolate deformylase; K01433 formyltetrahydrofolate deformylase [EC:3.5.1.10]
Formyltetrahydrofolate deformylase n=1 Tax=Polaromonas sp. CF318 RepID=J3D2V8_9BURK
SCNpilot_expt_1000_bf_scaffold_743_curated_29
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30455..30910)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Methyloversatilis universalis RepID=UPI00037CD0AD
sterol-binding domain protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_expt_1000_bf_scaffold_743_curated_30
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30907..31836)
DNA (930bp) protein (310aa)
peptidase U32; K01423 [EC:3.4.-.-]
hypothetical protein n=1 Tax=Methyloversatilis universalis RepID=UPI00037E5F40
Peptidase U32 {ECO:0000313|EMBL:ACB33739.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Displaying items 1-30 of 99 in total

View Taxonomy