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SCNpilot_expt_1000_bf_scaffold_146_curated

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Displaying items 1-30 of 166 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_146_curated_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..173)
DNA (171bp) protein (57aa)
Putative beta-oxoacyl-CoA thiolase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P604_AROAE
beta-oxoacyl-CoA thiolase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_146_curated_2
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

291..2312
DNA (2022bp) protein (674aa)
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CC46_DESTA
enoyl-CoA hydratase/carnithine racemase
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
SCNpilot_expt_1000_bf_scaffold_146_curated_3
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2329..4104
DNA (1776bp) protein (592aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00035E9ADC
acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_expt_1000_bf_scaffold_146_curated_4
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4133..5644
DNA (1512bp) protein (504aa)
long-chain-fatty-acid--CoA ligase 2 (EC:6.2.1.3)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00035F8661
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_expt_1000_bf_scaffold_146_curated_5
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5715..6731)
DNA (1017bp) protein (339aa)
Ribose ABC transport system permease protein RbsC n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I929_GRIHO
putative ABC-type branched-chain amino acid transport system, permease component
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_expt_1000_bf_scaffold_146_curated_6
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6740..8293)
DNA (1554bp) protein (518aa)
rbsA2; ribose import ATP-binding protein rbsA (EC:3.6.3.17); K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
Sugar ABC transporter ATP-binding protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YCJ7_9GAMM
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_expt_1000_bf_scaffold_146_curated_7
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8311..9375)
DNA (1065bp) protein (355aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GUQ2_9PROT
putative sugar ABC transporter; substrate-binding component; K11930 periplasmic protein TorT
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_expt_1000_bf_scaffold_146_curated_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9418..10287)
DNA (870bp) protein (290aa)
Conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K6W0_AZOSB
padD; phenylacetyl-CoA:acceptor oxidoreductase; K07308 anaerobic dimethyl sulfoxide reductase subunit C (DMSO reductase anchor subunit)
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_146_curated_9
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10284..10934)
DNA (651bp) protein (217aa)
phenylacetyl-CoA:acceptor oxidoreductase n=1 Tax=Azoarcus toluclasticus RepID=UPI00037959D3
padC; phenylacetyl-CoA:acceptor oxidoreductase
Conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase {ECO:0000313|EMBL:CAL94564.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
SCNpilot_expt_1000_bf_scaffold_146_curated_10
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10931..13678)
DNA (2748bp) protein (916aa)
Conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K6V8_AZOSB
Conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase {ECO:0000313|EMBL:CAL94563.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
padB; phenylacetyl-CoA:acceptor oxidoreductase
SCNpilot_expt_1000_bf_scaffold_146_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13816..14775)
DNA (960bp) protein (320aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus B4 RepID=T1X9P3_VARPD
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU49191.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_1000_bf_scaffold_146_curated_12
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14907..16490
DNA (1584bp) protein (528aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI0003669759
sulfatase
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_146_curated_13
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16576..17598
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI000361BCBC
Outer membrane transporter protein TsaT; Flags: Precursor;; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
dctP; TRAP dicarboxylate transporter subunit DctP
SCNpilot_expt_1000_bf_scaffold_146_curated_14
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17620..18102
DNA (483bp) protein (161aa)
TRAP-type C4-dicarboxylate transport system, small permease component n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WNZ1_9BURK
TRAP-type C4-dicarboxylate transport system, small permease component {ECO:0000313|EMBL:EHR73199.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
putative TRAP-type C4-dicarboxylate transport system, small permease component
SCNpilot_expt_1000_bf_scaffold_146_curated_15
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18119..19408
DNA (1290bp) protein (430aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002F6A34C
TRAP dicarboxylate transporter subunit DctM
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_146_curated_16
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19602..20603
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000368AEBC
AraC family transcriptional regulator
Putative AraC-family transcriptional regulator {ECO:0000313|EMBL:CAL94562.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
SCNpilot_expt_1000_bf_scaffold_146_curated_17
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20625..22202)
DNA (1578bp) protein (526aa)
FAD dependent oxidoreductase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WJA5_VEREI
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ABM57712.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_1000_bf_scaffold_146_curated_18
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22220..23119)
DNA (900bp) protein (300aa)
Transcriptional regulator, AraC family n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WJA6_VEREI
helix-turn-helix domain-containing protein
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABM57713.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_1000_bf_scaffold_146_curated_19
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23370..24965
DNA (1596bp) protein (532aa)
FAD dependent oxidoreductase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WJA8_VEREI
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ABM57715.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_1000_bf_scaffold_146_curated_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24993..25775
DNA (783bp) protein (261aa)
Cyclase family protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CLB2_VARPS
cyclase family protein
Cyclase family protein {ECO:0000313|EMBL:ACS17307.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_1000_bf_scaffold_146_curated_21
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25786..27930
DNA (2145bp) protein (715aa)
Indolepyruvate ferredoxin oxidoreductase {ECO:0000313|EMBL:ABM57717.1}; EC=1.2.7.8 {ECO:0000313|EMBL:ABM57717.1};; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8); K00179 indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
Indolepyruvate ferredoxin oxidoreductase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WJB0_VEREI
SCNpilot_expt_1000_bf_scaffold_146_curated_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27927..29474
DNA (1548bp) protein (516aa)
indolepyruvate oxidoreductase subunit B; K00180 indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
Putative indolepyruvate oxidoreductase subunit B n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CLB0_VARPS
Putative indolepyruvate oxidoreductase subunit B {ECO:0000313|EMBL:ACS17305.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_1000_bf_scaffold_146_curated_23
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29487..29903
DNA (417bp) protein (139aa)
Endoribonuclease L-PSP n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TMX8_MESCW
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:ADV09283.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_146_curated_24
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29999..31552
DNA (1554bp) protein (518aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WJB3_VEREI
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:ABM57720.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_1000_bf_scaffold_146_curated_25
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31591..32595
DNA (1005bp) protein (335aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WJB4_VEREI
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABM57721.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_1000_bf_scaffold_146_curated_26
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32592..33476
DNA (885bp) protein (295aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WJB5_VEREI
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABM57722.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_1000_bf_scaffold_146_curated_27
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33473..34369
DNA (897bp) protein (299aa)
ABC transporter-like protein; K01552 [EC:3.6.3.-]
ABC transporter related n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WJB6_VEREI
ABC transporter related {ECO:0000313|EMBL:ABM57723.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_1000_bf_scaffold_146_curated_28
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34366..35184
DNA (819bp) protein (273aa)
ABC transporter-like protein; K01552 [EC:3.6.3.-]
ABC transporter related n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WJB7_VEREI
ABC transporter related {ECO:0000313|EMBL:ABM57724.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_1000_bf_scaffold_146_curated_29
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35186..35509)
DNA (324bp) protein (108aa)
4Fe-4S binding domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RU06_9BURK
fdxA; ferredoxin protein; K05524 ferredoxin
4Fe-4S binding domain protein {ECO:0000313|EMBL:EFV96242.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
SCNpilot_expt_1000_bf_scaffold_146_curated_30
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35581..36492)
DNA (912bp) protein (304aa)
LysR family transcriptional regulator n=1 Tax=Burkholderia sp. JPY347 RepID=UPI000373F4F7
LysR family transcriptional regulator {ECO:0000313|EMBL:EIJ48490.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
LysR family transcriptional regulator; K03566 LysR family transcriptional regulator, glycine cleavage system transcriptional activator
Displaying items 1-30 of 166 in total

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