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SCNpilot_expt_1000_bf_scaffold_283_curated

Search features with annotation key words

Displaying items 31-60 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_283_curated_31
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30759..31859
DNA (1101bp) protein (367aa)
ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase (EC:3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Riboflavin biosynthesis protein RibD n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P7N9_AROAE
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_1000_bf_scaffold_283_curated_32
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31863..32492
DNA (630bp) protein (210aa)
riboflavin synthase subunit alpha; K00793 riboflavin synthase [EC:2.5.1.9]
Riboflavin synthase subunit alpha n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2GXQ7_9BURK
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:ESH93045.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
SCNpilot_expt_1000_bf_scaffold_283_curated_33
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32476..32970)
DNA (495bp) protein (165aa)
Putative uncharacterized protein n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QJ51_METS6
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_283_curated_34
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33054..34175
DNA (1122bp) protein (374aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00180}; Short=DHBP synthase {ECO:0000256|HAMAP-Rule:MF_00180};; EC=4.1.99.12 {ECO:0000256|HAMAP-Rule:MF_00180};; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
ribAB; riboflavin biosynthesis bifunctional protein: GTP cyclohydrase II AND 3,4-dihydroxy-2-butone-4-phosphate synthase (DHBP synthase) (EC:3.5.4.25); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
Riboflavin biosynthesis bifunctional protein: GTP cyclohydrase II AND 3,4-Dihydroxy-2-butone-4-phosphate synthase (DHBP synthase) n=1 Tax=Ralstonia syzygii R24 RepID=G3A5R8_9RALS
SCNpilot_expt_1000_bf_scaffold_283_curated_35
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34172..34813
DNA (642bp) protein (214aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=985078 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholde
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Burkholderia multivorans ATCC BAA-247 RepID=J5BXC9_9BURK
SCNpilot_expt_1000_bf_scaffold_283_curated_36
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34810..35301
DNA (492bp) protein (164aa)
N utilization substance protein B homolog n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8N6Z4_RALSL
nusB; antitermination factor (N utilization substance B) (transcriptional antiterminator)
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=859655 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CMR15.;"
SCNpilot_expt_1000_bf_scaffold_283_curated_37
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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35318..36274
DNA (957bp) protein (319aa)
thiL; thiamine-phosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16]
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128, ECO:0000313|EMBL:CBJ41995.1};; TaxID=859656 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CFBP2957.;"
Thiamine-monophosphate kinase n=1 Tax=Ralstonia solanacearum CFBP2957 RepID=D8NNU5_RALSL
SCNpilot_expt_1000_bf_scaffold_283_curated_38
Burkholderia grimmiae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36219..36767
DNA (549bp) protein (183aa)
Phosphatidylglycerophosphatase A {ECO:0000256|PIRNR:PIRNR006162}; EC=3.1.3.27 {ECO:0000256|PIRNR:PIRNR006162};; Phosphatidylglycerolphosphate phosphatase A {ECO:0000256|PIRNR:PIRNR006162}; TaxID=1071679 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia grimmiae.;"
pgpA; phosphatidylglycerophosphatase A (EC:3.1.3.27); K01095 phosphatidylglycerophosphatase A [EC:3.1.3.27]
phosphatidylglycerophosphatase n=1 Tax=Herbaspirillum lusitanum RepID=UPI0003197CC2
SCNpilot_expt_1000_bf_scaffold_283_curated_39
R_Proteobacteria_53_8, Proteobacteria, Bacteria

Not on your lists

36755..37288
DNA (534bp) protein (178aa)
Damage inducible protein CinA n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YYK0_9RHOO
cinA1; competence/damage inducible protein CinA; K03743
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
SCNpilot_expt_1000_bf_scaffold_283_curated_40
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


37355..38425
DNA (1071bp) protein (357aa)
Protein RecA n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RU64_9BURK
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
recA; RecA protein; K03553 recombination protein RecA
SCNpilot_expt_1000_bf_scaffold_283_curated_41
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38553..39023
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000363E408
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
recX; recombination protein RecX; K03565 regulatory protein
SCNpilot_expt_1000_bf_scaffold_283_curated_42
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39209..39781
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00035D7FBF
Uncharacterized protein {ECO:0000313|EMBL:KGF80437.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_283_curated_43
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39778..40941
DNA (1164bp) protein (388aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Burkholderia sp. H160 RepID=B5WK26_9BURK
succinyl-CoA synthetase subunit beta
SCNpilot_expt_1000_bf_scaffold_283_curated_44
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40956..41837
DNA (882bp) protein (294aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
sucD; succinyl-CoA synthetase subunit alpha (EC:6.2.1.5); K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X9K2_9BURK
SCNpilot_expt_1000_bf_scaffold_283_curated_45
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41851..42576
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0JDY0_ALCFA
Uncharacterized protein {ECO:0000313|EMBL:EJC61924.1}; TaxID=1156918 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis subsp. faecalis NCIB 8687.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_283_curated_46
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42749..43387
DNA (639bp) protein (213aa)
signal peptide protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034B8C66
fha domain-containing protein
FHA domain containing protein {ECO:0000313|EMBL:ACM34815.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_1000_bf_scaffold_283_curated_47
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43411..45438
DNA (2028bp) protein (676aa)
putative transmembrane sensor domain protein; K01768 adenylate cyclase [EC:4.6.1.1]
CHASE2 domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RU69_9BURK
CHASE2 domain protein {ECO:0000313|EMBL:EFV95852.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
SCNpilot_expt_1000_bf_scaffold_283_curated_48
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45413..46177
DNA (765bp) protein (255aa)
Metallo-beta-lactamase domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RU70_9BURK
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EFV95853.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
beta-lactamase domain protein
SCNpilot_expt_1000_bf_scaffold_283_curated_49
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46215..46499)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WR39_VEREI
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EGI95103.1}; TaxID=766141 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii 5216-82.;"
SCNpilot_expt_1000_bf_scaffold_283_curated_50
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46906..47328
DNA (423bp) protein (141aa)
Type IV pilin structural subunit n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HYK6_PSEUO
Competence protein {ECO:0000313|EMBL:ETM65706.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
Fimbrial protein pilin; K02650 type IV pilus assembly protein PilA
SCNpilot_expt_1000_bf_scaffold_283_curated_51
Pseudomonas knackmussii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48025..49392
DNA (1368bp) protein (456aa)
Putative sulfatase n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HXR1_PSEUO
Uncharacterized protein {ECO:0000313|EMBL:CDF86063.1}; TaxID=1301098 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_283_curated_52
unknown

Not on your lists

49396..50652
DNA (1257bp) protein (419aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_283_curated_53
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50842..51531)
DNA (690bp) protein (230aa)
thiamine-phosphate diphosphorylase (EC:2.5.1.3); K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
Thiamine-phosphate synthase n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=THIE_CHRVO
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
SCNpilot_expt_1000_bf_scaffold_283_curated_54
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51720..51908
DNA (189bp) protein (63aa)
Rubredoxin n=2 Tax=Methylovorus RepID=C6XBR6_METSD
rubredoxin-type fe(cys)4 protein
Rubredoxin {ECO:0000256|PIRNR:PIRNR000071}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
SCNpilot_expt_1000_bf_scaffold_283_curated_55
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51910..52335
DNA (426bp) protein (142aa)
Response regulator receiver domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RU73_9BURK
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP {ECO:0000313|EMBL:EXI91087.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
response regulator receiver; K02657 twitching motility two-component system response regulator PilG
SCNpilot_expt_1000_bf_scaffold_283_curated_56
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52380..52748
DNA (369bp) protein (123aa)
Twitching motility protein PilH n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W3K3_9BURK
Twitching motility protein PilH {ECO:0000313|EMBL:EGF30563.1}; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae bacterium IMCC9480.;"
pilH; twitching motility protein. pilH ortholog; K02658 twitching motility two-component system response regulator PilH
SCNpilot_expt_1000_bf_scaffold_283_curated_57
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52751..53269
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000319EE91
Twitching motility protein PilI {ECO:0000313|EMBL:KIF81090.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
pilI; PilI twitching motility protein; K02659 twitching motility protein PilI
SCNpilot_expt_1000_bf_scaffold_283_curated_58
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53292..55568
DNA (2277bp) protein (759aa)
Putative twitching motility transmembrane protein PilJ-like n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G8M4_HERAR
pilJ; twitching motility transmembrane protein; K02660 twitching motility protein PilJ
Putative twitching motility transmembrane protein PilJ-like {ECO:0000313|EMBL:CAL62861.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
SCNpilot_expt_1000_bf_scaffold_283_curated_59
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55612..61512
DNA (5901bp) protein (1967aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00036BFACB
Chemotaxis protein CheA {ECO:0000313|EMBL:AJW44553.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt; K02487 type IV pili sensor histidine kinase and response regulator; K06596 chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
SCNpilot_expt_1000_bf_scaffold_283_curated_60
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61541..62110
DNA (570bp) protein (190aa)
UPF0301 protein RSIPO_02325 n=5 Tax=Ralstonia solanacearum RepID=B5SH41_RALSL
transcriptional regulator; K07735 putative transcriptional regulator
UPF0301 protein RCFBP_20740 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=859656 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CFBP2957.;"
Displaying items 31-60 of 86 in total

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