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SCNpilot_expt_500_p_scaffold_363_curated

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_363_curated_1
unknown

Not on your lists

152..889
DNA (738bp) protein (246aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_363_curated_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

955..1902
DNA (948bp) protein (316aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
prolyl aminopeptidase (EC:3.4.11.5); K01259 proline iminopeptidase [EC:3.4.11.5] rbh
Proline iminopeptidase n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82SM0_NITEU
SCNpilot_expt_500_p_scaffold_363_curated_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2089..2781
DNA (693bp) protein (231aa)
D-alanyl-D-alanine dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671}; Short=D-Ala-D-Ala dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671};; EC=3.4.13.22 {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
D-alanyl-D-alanine dipeptidase; K08641 D-alanyl-D-alanine dipeptidase [EC:3.4.13.22]
D-alanyl-D-alanine dipeptidase n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225A962
SCNpilot_expt_500_p_scaffold_363_curated_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2865..4109
DNA (1245bp) protein (415aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BKB8_OLICM
Uncharacterized protein {ECO:0000313|EMBL:AIL12855.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
acyltransferase 3
SCNpilot_expt_500_p_scaffold_363_curated_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4129..5379
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000372E193
Uncharacterized protein {ECO:0000313|EMBL:AIL12856.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_363_curated_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5376..5606)
DNA (231bp) protein (77aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12857.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_363_curated_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5603..5869)
DNA (267bp) protein (89aa)
Response regulator receiver protein n=1 Tax=Simkania negevensis (strain ATCC VR-1471 / Z) RepID=F8L6T5_SIMNZ
Uncharacterized protein {ECO:0000313|EMBL:AIL12857.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
response regulator receiver protein
SCNpilot_expt_500_p_scaffold_363_curated_8
Algoriphagus machipongonensis, Algoriphagus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

5922..6293
DNA (372bp) protein (124aa)
Serine/threonine protein kinase/response regulator/adenylate cyclase n=1 Tax=Algoriphagus machipongonensis RepID=A3HV31_9BACT
Serine/threonine protein kinase/response regulator/adenylate cyclase {ECO:0000313|EMBL:EAZ82003.1}; TaxID=388413 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Algoriphagus.;" source="Algoriphagus machipongonensis.;"
serine phosphatase RsbU, regulator of sigma subunit
SCNpilot_expt_500_p_scaffold_363_curated_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6691..6966
DNA (276bp) protein (92aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12829.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_363_curated_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6998..7234
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46A27_METBF
Uncharacterized protein {ECO:0000313|EMBL:AIL12830.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein; K09779 hypothetical protein
SCNpilot_expt_500_p_scaffold_363_curated_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7234..7587
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B249
Uncharacterized protein {ECO:0000313|EMBL:AIL12831.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_363_curated_12
unknown

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comp(7674..8087)
DNA (414bp) protein (138aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_363_curated_13
unknown

Not on your lists

comp(8084..8200)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_363_curated_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8441..9136)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BF31_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL12866.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_363_curated_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9356..10705
DNA (1350bp) protein (450aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
gltX2; glutamyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17]
Glutamate--tRNA ligase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z2C5_AZOL4
SCNpilot_expt_500_p_scaffold_363_curated_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10711..12072
DNA (1362bp) protein (454aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
cysS; cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FQF1_PHAMO
SCNpilot_expt_500_p_scaffold_363_curated_17
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12081..12893)
DNA (813bp) protein (271aa)
Uracil-DNA glycosylase, family 4 n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H300_9PROT
Uracil-DNA glycosylase, family 4 {ECO:0000313|EMBL:EKV32610.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
Phage SPO1 DNA polymerase-related protein
SCNpilot_expt_500_p_scaffold_363_curated_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12893..13435)
DNA (543bp) protein (181aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
aroK; shikimate kinase; K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase n=1 Tax=uncultured bacterium RepID=K2EVH1_9BACT
SCNpilot_expt_500_p_scaffold_363_curated_19
unknown

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13543..13692
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_363_curated_20
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13689..14624
DNA (936bp) protein (312aa)
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Tyrosine recombinase XerD id=3710725 bin=GWC2_Alphaproteobacteria_42_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
tyrosine recombinase XerD; K04763 integrase/recombinase XerD
SCNpilot_expt_500_p_scaffold_363_curated_21
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14648..15598
DNA (951bp) protein (317aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoeb
accA; acetylCoA carboxylase subunit alpha; K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2]
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z319_AZOL4
SCNpilot_expt_500_p_scaffold_363_curated_22

Not on your lists

comp(15623..16228)
DNA (606bp) protein (202aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
def3; Polypeptide deformylase; K01462 peptide deformylase [EC:3.5.1.88]
Peptide deformylase 2 id=3959949 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=Rickettsia taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
SCNpilot_expt_500_p_scaffold_363_curated_23
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16326..17564)
DNA (1239bp) protein (413aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12872.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Membrane protein, putative id=4468714 bin=GWC2_Alphaproteobacteria_42_16 species=Wolbachia endosymbiont of Drosophila simulans genus=Wolbachia taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein
SCNpilot_expt_500_p_scaffold_363_curated_24
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17620..18504
DNA (885bp) protein (295aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TI28_TISMK
exoN; UTP--glucose-1-phosphate uridylyltransferase
SCNpilot_expt_500_p_scaffold_363_curated_25
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18518..19861
DNA (1344bp) protein (448aa)
rkpK1; UDP-glucose 6-dehydrogenase; K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]
UDP-glucose 6-dehydrogenase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZGW2_AZOL4
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:AIL12874.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_363_curated_26
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19865..20323)
DNA (459bp) protein (153aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12875.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_363_curated_27
Pelosinus sp. UFO1, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(20375..21379)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:AIF50416.1}; Flags: Precursor;; TaxID=484770 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus sp. UFO1.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_363_curated_28
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21467..22414
DNA (948bp) protein (316aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
translation factor Sua5 n=1 Tax=Hirschia maritima RepID=UPI00036ED591
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
SCNpilot_expt_500_p_scaffold_363_curated_29
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22565..23392
DNA (828bp) protein (276aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7]
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00035E4617
SCNpilot_expt_500_p_scaffold_363_curated_30
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23394..24659
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2LS02_9PROT
2-methylthioadenine synthase {ECO:0000313|EMBL:AIL12879.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
MiaB family RNA modification protein
Displaying items 1-30 of 68 in total

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